vpbrendel Goto Github PK
Name: Volker Brendel
Type: User
Company: Indiana University
Location: Bloomington, IN
Blog: http://brendelgroup.org
Name: Volker Brendel
Type: User
Company: Indiana University
Location: Bloomington, IN
Blog: http://brendelgroup.org
Integrated toolkit for analysis and evaluation of annotated genomes
Code for rice genome analyses (but not necessarily only rice)
Handbook for Brendel Group students, postdocs, and staff
A portal to our collection of Singularity/Apptainer definition and image files
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
Bisulfite-seq data Workflow Automation Software and Protocols
R functions and scripts to process output from the BWASP workflow
Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor
code developed for the analysis of the Rice 3000 Genomes project data
code and supplementary documents supporting the FMAB book project
Fork of BrendelGroup/CTBPprj
Fundamental Models and Algorithms in Bioinformatics
Workflows for genome alignment chain file selection and annotation tasks
Sensitive spliced-alignment of cDNAs or proteins
Explore eukaryotic genome composition and organization with iLoci
GoRAMPAGE - a workflow for promoter detection by 5'-read mapping
Computational workflows for STRIPE-seq data analyses
Procedures and data for the iLoci study described in Lai et al. (2020)
Procedures and data for the iLoci study described in Standage, Lai and Brendel (2022)
Motif set Reduction and Validation (MoVRs) - a workflow for the derivation of genome-wide DNA motif detection and vetting
This is an implementation of modified RBO in the case of ranking gene lists.
Evaluation and annotation of assembled transcripts
Selective and Recursive local Assembler
A portal to our collection of singularity definition and image files
Targeted reference-guided genome assembly for comparative rice genomics
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.