vsitzmann/deepoptics

deepoptics's Issues

Installation woes

Dear Vincent,

I loved your paper and I wanted to try playing with the code a little myself! Would love to talk to you about some of your results at some point too.

Why the issue - I am having some installation woes: when I try to do the default conda environment install I get the error messages below. My understanding from StackOverflow - and I might be wrong - is that results like this are often due to the environment being exported with a different platform to the target machine (Mac OS X in my case).

Or perhaps a problem at my end?

All the best,

Ben

(base) Benjamins-MBP-6:deepoptics benjaminpope$ pwd
/Users/benjaminpope/code/deepoptics
(base) Benjamins-MBP-6:deepoptics benjaminpope$ conda env create -f src/environment.yml
Collecting package metadata (repodata.json): done
Solving environment: failed

ResolvePackageNotFound:

• expat==2.2.5=he0dffb1_0
• tornado==4.5.2=py36h1283b2a_0
• zeromq==4.2.2=hbedb6e5_2
• gmp==6.1.2=h6c8ec71_1
• pip==9.0.1=py36h6c6f9ce_4
• scikit-image==0.13.1=py36h14c3975_1
• partd==0.3.8=py36h36fd896_0
• glib==2.53.6=h5d9569c_2
• pygments==2.2.0=py36h0d3125c_0
• mistune==0.8.1=py36h3d5977c_0
• ipython_genutils==0.2.0=py36hb52b0d5_0
• notebook==5.2.1=py36h690a4eb_0
• scipy==1.0.0=py36hbf646e7_0
• pickleshare==0.7.4=py36h63277f8_0
• icu==58.2=h9c2bf20_1
• bleach==2.0.0=py36h688b259_0
• libstdcxx-ng==7.2.0=h7a57d05_2
• qtconsole==4.3.1=py36h8f73b5b_0
• python-dateutil==2.6.1=py36h88d3b88_1
• simplegeneric==0.8.1=py36h2cb9092_0
• ipython==6.2.1=py36h88c514a_1
• jupyter_console==5.2.0=py36he59e554_1
• pywavelets==0.5.2=py36he602eb0_0
• tblib==1.3.2=py36h34cf8b6_0
• six==1.11.0=py36h372c433_1
• zlib==1.2.11=ha838bed_2
• sqlite==3.20.1=hb898158_2
• pytz==2017.3=py36h63b9c63_0
• jedi==0.10.2=py36h552def0_0
• pyqt==5.6.0=py36h0386399_5
• jupyter_core==4.4.0=py36h7c827e3_0
• terminado==0.6=py36ha25a19f_0
• yaml==0.1.7=had09818_2
• ca-certificates==2017.08.26=h1d4fec5_0
• ptyprocess==0.5.2=py36h69acd42_0
• webencodings==0.5.1=py36h800622e_1
• pyparsing==2.2.0=py36hee85983_1
• decorator==4.1.2=py36hd076ac8_0
• jpeg==9b=h024ee3a_2
• libgfortran-ng==7.2.0=h9f7466a_2
• libffi==3.2.1=hd88cf55_4
• libpng==1.6.32=hbd3595f_4
• pandocfilters==1.4.2=py36ha6701b7_1
• gstreamer==1.12.2=h4f93127_0
• jinja2==2.9.6=py36h489bce4_1
• python==3.6.3=h6c0c0dc_5
• zict==0.1.3=py36h3a3bf81_0
• certifi==2017.11.5=py36hf29ccca_0
• libxml2==2.9.4=h2e8b1d7_6
• nbformat==4.4.0=py36h31c9010_0
• jsonschema==2.6.0=py36h006f8b5_0
• cytoolz==0.9.0.1=py36h14c3975_0
• pexpect==4.3.0=py36h673ed17_0
• intel-openmp==2018.0.0=hc7b2577_8
• entrypoints==0.2.3=py36h1aec115_2
• numpy==1.13.3=py36ha12f23b_0
• pyyaml==3.12=py36hafb9ca4_1
• widgetsnbextension==3.0.8=py36h25a1d49_0
• jupyter_client==5.1.0=py36h614e9ea_0
• cycler==0.10.0=py36h93f1223_0
• ncurses==6.0=h9df7e31_2
• prompt_toolkit==1.0.15=py36h17d85b1_0
• ipywidgets==7.0.5=py36h31d6531_0
• libxcb==1.12=hcd93eb1_4
• fontconfig==2.12.4=h88586e7_1
• pcre==8.41=hc27e229_1
• sip==4.18.1=py36h51ed4ed_2
• dbus==1.10.22=h3b5a359_0
• wheel==0.30.0=py36hfd4bba0_1
• libgcc-ng==7.2.0=h7cc24e2_2
• markupsafe==1.0=py36hd9260cd_1
• pandoc==1.19.2.1=hea2e7c5_1
• libsodium==1.0.15=hf101ebd_0
• mkl==2018.0.1=h19d6760_4
• wcwidth==0.1.7=py36hdf4376a_0
• click==6.7=py36h5253387_0
• matplotlib==2.1.0=py36hba5de38_0
• html5lib==0.999999999=py36h2cfc398_0
• jupyter==1.0.0=py36h9896ce5_0
• freetype==2.8=hab7d2ae_1
• readline==7.0=ha6073c6_4
• nbconvert==5.3.1=py36hb41ffb7_0
• psutil==5.4.3=py36h14c3975_0
• setuptools==36.5.0=py36he42e2e1_0
• pillow==5.0.0=py36h3deb7b8_0
• pyzmq==16.0.3=py36he2533c7_0
• libedit==3.1=heed3624_0
• pandas==0.22.0=py36hf484d3e_0
• libtiff==4.0.9=h28f6b97_0
• opencv3==3.1.0=py36_0
• locket==0.2.0=py36h787c0ad_1
• ipykernel==4.6.1=py36hbf841aa_0
• openssl==1.0.2m=h26d622b_1
• traitlets==4.3.2=py36h674d592_0
• tk==8.6.7=hc745277_3
• xz==5.2.3=h55aa19d_2
• gst-plugins-base==1.12.2=he3457e5_0
• msgpack-python==0.5.6=py36h6bb024c_0
• qt==5.6.2=h974d657_12
• testpath==0.3.1=py36h8cadb63_0

supplementary material

Dear author，great work， can you share your supplementary material because I cannot find it in your project page.

Thank you so much~