vsoch/nifti-drop

a playground for visualizing and working with nifti images without a server

Nifti-Drop

Read nifti and nidm files in browser under development

• view header details for nifti
• interactive coordinate browsing
• save image to file (export)
• view nidm results
• uses font brain for nidm and brain imaging icons

Versions

Static Local

The base structure of the repo (including index.html, js, css, data, and img work to run a local, static installation. This version works in browsers works in browsers with FileReader support. Depending on the paths in nidm file, however, there can be cross browser issues leading to unreliable loading of some nidm files. To get around this, a python module has been developed for use on a server.

Python module

This repo also includes a python module to run nifti-drop from a server, and generate an initial page that has some set of relative files embedded in it. This version will continue to function to drop new images from the user, however it cannot be used to dynamically retrieve different files from the server once the page has been loaded. See an [example][examples/run_local.py] for how to generate this viewer.

To install

  pip install git+git://github.com/vsoch/nifti-drop.git

Many Thanks

Papaya Viewer, we salute you!

Coming Soon

• multiple image browsing

demo

nifti-drop's Issues

integrate viewer?

tables should be generated dynamically with sorting options

Add buttons to download dummy (demo) data

python version for server

table / figure export

Right now we can export a static image of the canvas, and added to this should be analysis parameters (defined by nidm results, if applicable), and different options for the table:

• rendered into figure
• as TSV file

.nii.gz support is essential

NIDM export

Interactive coordinate viewing

User should be able to click a cluster/peak coordinate, and navigate on viewer.

• should use the crosshair icon from font brain
• papaya issue is here

Multiple image viewing from nidm results file

The nidm results file also includes mean image, error, and these should be browsable as well. Buttons might go at the top, with appropriate font-brain icons to go alongside.