wangleihitcs/mti

NIM Medical Text Indexer, use its API to get tags from medical text.

MTI Project

Introduce

NIM Medical Text Indexer, use its API to get tags from medical text. I have download its need jar libraries, and give an examples.
Here is Web api link, https://ii.nlm.nih.gov/Web_API/index.shtml
Here is blog link, https://blog.csdn.net/wl1710582732/article/details/79869234

Libraries

• jars
  • skrAPI.jar
  • httpclint.jar
  • httpcore.jar
  • ...
• jdk 1.8
  

eg. All need jars exist MTI/libs, and you must apply an UMLS account to use its Web API.

Batch Solve

Because it says you must only resquest no more than 10 time a minute and a request contains character no more than 10000. So we need batch solve.

• samples.txt like:
  • 00000011|your medical txt, ...
  • 00000012|your medical txt, ...
  • 00000013|your medical txt, ...
• result like:
  • 00000011|tag1|...
  • 00000011|tag2|...
  • 00000012|tag3|...
  • 00000013|tag1|...
• java code:
  • you should add "myGenericObj.setField("SingLinePMID", true);" to your java code.

Conclusion

My code is very easy, and give some medical texts to let you test! Remember use absolute path！
I have give the multi threads method in my code, so you can batch request Web API to solve batchs .txt files.

mti's Issues

Need clarification for the result

MTI/data/tag10/CXR1.txt

Line 1 in b37cb51

00000000|*Pneumothorax|C0032326|38868|MH|RtM via: Pneumothorax;Forced Leaf Node Lookup:pneumothorax|TI|MM;RC|217^12^0

Can you please say what does the last information mean, 217^12^0 in above result? I can not find it at https://ii.nlm.nih.gov/resource/MTI_output_help_info.html

USML 帐号

帐号注册后一直没回复啊，兄弟你有注册到么？

Could you please explain the result you get？