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dataquality

DataQuality for BigData

db-meta

database meta crawl tool

db-schema-key-generator

docker-client

A simple docker client for the JVM

docker-gitlab

Dockerized gitlab web server

docker-java

Java Docker API Client

dx-toolkit

DNAnexus platform client libraries.

fastqc_db

Examine large amounts of FastQC results using these scripts

file-transfer-accelerators

flockdb

A distributed, fault-tolerant graph database

gemini

a lightweight db framework for exploring genetic variation.

glances

Glances an Eye on your system. A top/htop alternative.

glow

Glow is an easy-to-use distributed computation system written in Go, similar to Hadoop Map Reduce, Spark, Flink, Storm, etc. I am also working on another similar pure Go system, https://github.com/chrislusf/gleam , which is more flexible and more performant.

gobblin

Universal data ingestion framework for Hadoop.

gotestlinkreport

A web site for displaying Test Link Report. Power by Golang and Beego.

hadoop-bam

Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework with the Picard SAM JDK, and command line tools similar to SAMtools.

hadoop-genomic-analysis-package

Distributed tools for performing summaries and QCs for next-gen sequencing data using Hadoop

harbor

An enterprise-class container registry server based on Docker Distribution

idata

inbloom

Cross language bloom filter implementation

java-genomics-io

A simple and performant API for working with many genomic file formats in a consistent fashion

jsqlparser

JSqlParser parses an SQL statement and translate it into a hierarchy of Java classes. The generated hierarchy can be navigated using the Visitor Pattern

juice

A Distribution Task Management System

kubernetes

Container Cluster Manager from Google

libnfs-python

Python bindings for libnfs

metagenomedb

Metagenomics data (sequences and annotations) management system, powered by a MongoDB document-oriented database wrapped into a Python API and command-line tools.

nextflow

A DSL for data-driven computational pipelines

ngseasy

Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

opencga

An Open Computational Genomics Analysis platform for big data processing and analysis in genomics

opsworks-docker

Opsworks Chef Cookbook for Docker deployments.