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3D BEM code for vesicles in confinement.
This project forked from jbarakat/bem3d_ves_tube
3D BEM code for vesicles in confinement.
This code is a modified version of Hong Zhao's blood code for large-scale simulation of the microcirculation. It is reformatted to model the low-Reynolds number motion of a vesicle through a channel. In short, all references to the "Cell" class are changed to "Vesicle" class. The stokesys_flowsolver.cc code is still used to assemble the resistance equation, but references to "Rigid" are not utilized. A single vesicle is placed in the channel. Changes made (7/25/2014 by Andrew Spann): vessim/channel.cc lib/stokesys.cc include/stokesys.h lib/stokesys_flowsolver.cc vessim/vesinitcond.cc Things to change: stokesys_flowsolver.cc - this library assembles the resistance matrix corresponding to cell-cell, cell-rigid, cell-wall, etc. interactions - look at solveFlow(), which will call calclhs and calcrhs (LHS and RHS of the resistance equation) - need to get rid of anything that refers to an elastic force - need to add in things that solve for surface tension using vesicle functions - don't need to change vesicle.cc or vesicle.h, but will be calling things in those functions - vesys.cc is the template you'll look at in order to make the appropriate changes to stokesys_flowsolver.cc (try to replicate the content of vesys.cc into stokesys_flowsolver) - goal is to make the content of the flow solver in vesys.cc (e.g. the solveVel function) play nice with the walls
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