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Name: Leighton Pritchard

Type: User

Company: University of Strathclyde

Bio: I'm a computational biologist, working at the University of Strathclyde, in Glasgow.

Twitter: widdowquinn

Location: Glasgow, Scotland

Blog: https://www.strath.ac.uk/staff/pritchardleightondr/

Hi there 👋

About Me

I'm a computational biologist, currently holding a Chancellor's Fellow (lecturer) position in the Institute of Pharmacy and Biomedical Sciences (SIPBS), at the University of Strathclyde. I lead the SIPBS Computational Biology group.

Areas of Interest

Microbiology and microbial genomics (taxonomy and classification, host-microbe interactions, functional annotation, etc.)
Industrial biotechnology (protein engineering, improving industrial strains, etc.)
Biostatistics and modelling (metabolic modelling, experimental design, etc.)
💬 Ask me about:
- Research collaborations
- Postdoctoral positions
- PhD studentships
📫 How to reach me:
- 📧 Email: [email protected]
- 🐦 Twitter: @widdowquinn
- 🐘 Mastodon: @[email protected]
- 👨🏻‍🔬 Work: https://www.strath.ac.uk/staff/pritchardleightondr/
- 🥳 Group: https://sipbs-compbiol.github.io/
- 👾 Group GitHub: https://github.com/sipbs-compbiol

Leighton Pritchard's Projects

hackyhourhandbook

A handbook (forked from the original by Amanda Miotto) for those who want to start coordinating Hacky Hour events in their University/Institute

hap-e_logo

Work on the logo for the Centre for Human and Animal Pathogens in the Environment

ideel

Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes

jupyter_demos

Sample notebooks for demonstrating Jupyter

kgml

Python code to parse, manipulate, download, and visualise KGML (KEGG markup language) biological pathway data.

lpbio

Scripts, tools and modules for computational biology

lptwitdelete

Script and package to delete Twitter statuses.

metabsimpleqcviz

metabworkflowtutorial

https://cimcb.github.io/MetabWorkflowTutorial/

mylabbook

Helper scripts for electronic lab book

ncfp

Program and package that retrieves nucleotide coding sequences from NCBI that correspond to a set of input protein sequences.

notebooks

iPython notebooks, and supporting files

notebooks-bioinformatics

Jupyter/iPython notebooks related to bioinformatics.

pdfcomments

pilercrpy

Python package for interacting with PILER-CR CRISPR repeat finding output.

pore_docs

presentation-2017-06-19-uoaberystwyth

Seminar delivered at the University of Aberystwyth, 19th June 2017

presentation-2017-10-23_jhi

Bacteriology presentation of pyani summary/roadmap

presentation-2017-11-01-euphresco

Presentation delivered at the 2017 EUPHRESCO workshop in Edinburgh, 1st November 2017

presentation-2018-04-10-koln

Presentation for Minisymposium at Biozentrum, Köln

presentation-datavis-barplots

A presentation on data visualisation, focusing on deficiencies of barplots.

presentation-sscr

Temporary repo so my SSCR presentation is available

public_scripts

collection of bioinformatic scripts

pyadhore

Python code for handling i-ADHoRe output.

pyani

Application and Python module for average nucleotide identity analyses of microbes.

pycazy

Library to scrape/interact with the CAZy database

pymetabc

Lightweight trimming, merging, thresholding and visualisation of metabarcoding reads.

pyrbbh

Module to find reciprocal matches/clusters of protein sequences

pysge

Library to interact with the SGE/OGE job scheduler

rstudio-example

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