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Name: hkim
Type: User
Name: hkim
Type: User
Simulate rearranged focal amplifications such as ecDNA and BFB.
1st Edition of Elegant SciPy (O'Reilly Publishers)
EpiHet
Constuct Extrachromosomal Circular DNA using Whole Genome Sequencing Data
Evolutionary Moduli space visualization and statistics
Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of functional genomic data.
Robust and efficient workflows using a simple language agnostic approach
Python-based framework for computational immunomics
GATK Official Release Repository: contains the core MIT-licensed GATK framework, free for all uses
Official code repository for GATK versions 4 and up
Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools
Workflows for somatic short variant discovery with GATK4
docker container for running NCI GDC gdc-client
Unix, R and python tools for genomics
three class intro to git: git workflow in desktop app, GitHub, command line git
Scripts to reproduce results presented in "Single-molecule mapping reveals the dynamics of chromatin folding in the human genome"
High Dimensional Data Analysis
Various utility tools for working with genomics data
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
Lab Materials for MIT 6.S191: Introduction to Deep Learning
MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.
Tutorial for Jackson Labs intro to Nextflow, containers, FlowCraft and Deploit
Scripts for HarvardX courses: PH525x
Long-Read Sequencing Workshop
https://thejacksonlaboratory.github.io/long-read-workshop-2019/
Meta-analysis of expression and methylation signatures in neuropsychiatric disorders
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.