wjgxw/xrecon

XRecon from Agilent (part of VnmrJ)

"README" #Xrecon - External Reconstruction

This is Xrecon, a collection of magnetic resonance image reconstruction routines tuned to read data acquired on Varian MRI Systems. It has been developed to work externally and independently of the Varian data acquisition software VnmrJ.

The routines provided here link against the GNU Scientific Library (GSL) and the Fastest Fourier Transform in the West (FFTW) library of subroutines. The GSL is free software published under the GNU General Public License (GPL). The FFTW is free software published under the GNU General Public License (GPL). As such it is a requirement that the routines provided here are also published under the GPL.

To publish under the GPL two elements must be added to each source file:

1. A copyright notice with the names of all contributors.
2. A statement of copying permission saying the program is distributed under the terms of the GNU General Public License.

A copy of the license itself should also be included.

Xrecon is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

Xrecon is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

##Travis-CI

##Installation

Please consult the INSTALL file in this distribution for instructions.

##Files

COPYING The GPL INSTALL Installation instructions README This file Makefile Xrecon makefile data.h Stripped down Agilent data file handler Xrecon.c Main External Reconstruction Xrecon.h Global includes and defines

###recon1D recon1D.c 1D recon default1D.c Default 1D recon profile1D.c 1D profile recon

###recon2D recon2D.c 2D recon default2D.c Default 2D recon asltest2D.c 2D ASL test mode proj2D.c 2D projection recon

###recon3D recon3D.c 3D recon default3D.c Default 3D recon multiblock3D.c Default multiblock 3D recon

###reconEPI reconEPI.c EPI recon defaultEPI.c Default EPI recon dprocEPI.c EPI data processing prescanEPI.c EPI prescan recon

##reconCSI reconCSI.c CSI recon reconCSI2D.c 2D CSI recon reconCSI3D.c 3D CSI recon dprocCSI.c CSI data processing

###common1D dproc1D.c 1D data processing dread1D.c 1D data read dutils1D.c 1D data utilities write1D.c 1D phasefile and datafaile writing

###common2D dmask2D.c 2D data masking dproc2D.c 2D data processing dread2D.c 2D data read dutils2D.c 2D data utilities noise2D.c 2D routines for noise matrix measurements fdfwrite2D.c 2D fdf writing rawwrite2D.c 2D raw binary writing tifwrite2D.c 2D TIFF writing

###common3D dproc3D.c 3D data processing fdfwrite3D.c 3D fdf writing rawIO3D.c 3D raw binary writing

###common dhead.c Data header routines dproc.c Data processing dread.c Data read dutils.c Data utilities options.c Input options pars.c Parameter read routines utils.c General utilities

###nifti niftiwrite.c NIFTI-1/Analyze7.5 writing nifti1.h NIFTI-1 header

##Contacts

Paul Kinchesh, Agilent Technologies, 6 Mead Road, Oxford Industrial Park, Oxford OX5 1QU, UK [email protected]

##Bug Reports

Paul Kinchesh, [email protected]

##Contributors

Paul Kinchesh, Magnetic Resonance Systems, Agilent Technologies. Martyn Klassen, Robarts Research Institute, University of Western Ontario. Alexandr Khrapichev, Department of Physiology, Oxford University. Margaret Kritzer, Magnetic Resonance Systems, Agilent Technologies. Lana Kaiser, Magnetic Resonance Systems, Agilent Technologies.