ImageJ macro for segmentation and quantification of presynaptic ribbon and postsynaptic density for analysis published in eLife https://doi.org/10.7554/eLife.48914
This macro requires the following plugins installed on ImageJ in addition to the ones that comes with the FIJI package https://fiji.sc/:
3D Suite https://imagejdocu.tudor.lu/plugin/stacks/3d_ij_suite/start
Stack Normalizer https://imagej.nih.gov/ij/plugins/normalizer.html