wonseok92 / omicr Goto Github PK
View Code? Open in Web Editor NEWThis project forked from btalamantesbecerra/omicr
omicR It creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data) and long-read sequences (Illumina, PacBio… etc).
License: Apache License 2.0