wukevin/rnagps

Interpretable model of sub-cellular RNA localization.

rnagps's Issues

Something wrong about "/models/nes_nls_rf.0.21.3.skmodel"

Hi, thank you for this great work.

When I used "nes_nls_rf.0.21.3.skmodel", I found it was just a list of model performance, not a saved model. So it seems that something wrong happened when it was uploaded.

Could you re-upload it if possible?
Thanks

Reproducing jupyter notebook results

Hi Kevin,

I find this project really interesting and would like to try it out on one of our internal datasets. So, as a first step, I was trying to reproduce some of your results from the jupyter notebook jupyter/multi_localization/multi_localization_kmer.ipynb, and right now I'm having a really tough time due to some issues. Some of the dependencies like biopython, pyfaidx, pytorch, tqdm are missing from the environment.yaml file and I've also noticed that there are a couple of files hard coded in data_loader module that are missing, for example, the files in line 72, 81 and line 159.

It would be great if you can upload the missing files somewhere or update the README.md with some additional information on how to reproduce these missing files.

Thank you for your help.