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followers: 39.0 following: 4.0 repos: 29.0 gists: 1.0

Name: Lucas Sinclair

Type: User

Company: Sinclair.Bio

Bio: Bioinformatics consulting, Data Science, DevOps

Location: Post-geographic consultant

Blog: https://sinclair.bio

Lucas Sinclair's Projects

autopaths

autopaths is a python package for dealing with file paths and automation.

bumphub

Scripts to automate distribution and packaging of python modules on PyPI and conda

`cbmcfs3_runner` is a python package for dealing with the automation and running of a complex series of models involving the European economy, carbon budgets and their interactions. Notably in relation to the CBM-CFS3 model developed by Canada.

crest4

The `crest4` python package can automatically assign taxonomic names to DNA sequences obtained from environmental sequencing.

crest4_utils

Utilities and scripts usefull for the developement of `crest4`

fasta

This package enables you to deal with biological sequence files easily.

forest_puller

This python package lets you automatically download and parse european forest data from several different public sources.

gefes

Genome Extraction From Environmental Sequencing

genomes

Easy access to meta data about genome assemblies

ld12

Analysis of the LD12 genomes and the freshwater genomes for the "Tuning fresh" paper

libcbm_py

Carbon budget model library based on CBM-CFS3

libcbm_runner

`libcbm_runner` is a python package for automating simulations of forest growth and harvesting involving the European economy, carbon budgets and their interactions.

optmagic

This project enables you to create simple command line interfaces starting with a class or a function that you want to expose directly to the shell.

pacmill

The `pacmill` python package is a bioinformatics pipeline that is developed to process microbial 16S amplicon sequencing data and produce PDF reports detailing taxonomical assignments along with other statistics.