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Cohort analysis of TCGA mc3 with PHIAL
Map genetic variants and protein positions to protein interfaces in 3D
Basic linear polygenic risk score to predict protein levels in CPTAC
A project for exploring differentially active signaling paths related to proteomics datasets
Tools for Descriptive Statistics and Exploratory Data Analysis
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
An R package for classification of immune subtypes, in cancer, using gene expression data.
CMap Notebooks for LINCS 2020 Workshop
Multi-omic study of luminal breast cancer
microsatellite instability detection using tumor only or paired tumor-normal data
NeoFlow: a proteogenomics pipeline for neoantigen discovery
By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline
Contains the code and scripts used to process and analyze the data for my analysis of super-enhancer function in ovarian cancer cells (OVCAR3) and in patient RNA-seq and Copy Number data from The Cancer Genome Atlas (TCGA). This project was published by Nat. Communications in July 2022. https://doi.org/10.1038/s41467-022-31919-8
Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis Consortium (CPTAC)
Parallel S3 and local filesystem execution tool.
Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
RNA-seq aligner
Scripts to import your FeatureCounts output into DEXSeq
TSNet - A New Method for Constructing Tumor Specific Gene Co-Expression Networks Based on Samples with Tumor Purity Heterogeneity
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.