xiuying Goto Github PK

illumitag

Pipeline for analyzing 16S rRNA Illumina paired-end amplicon sequencing

kallisto

Near-optimal RNA-Seq quantification

lungcancer_sv_timing_analyses

m6asnp

m6ASNP: a tool for annotating genetic variants by m6A function

machine_learning_examples

A collection of machine learning examples and tutorials.

mcaller

A python program to call methylation (m6A in DNA) from nanopore signal data

metagenome

Metagenome analysis pipeline

metagenomics-pipeline

Metagenomics Pipeline

metdiff

miso

MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation

mypresentations

this is my presentaion area .个人演讲稿展示区，主要展示一些平时的个人演讲稿或者心得之类的，

ngs

Scripts for next generation sequencing

ngsplot

Quick mining and visualization of NGS data by integrating genomic databases

nugen_barcode_splitter

Nugen Barcode Splitter for Illumina - This gem is designed to demultiplex reads produced by Illumina with nugen barcodes. It is using FASTX-toolkit for the barcode splitting.

parpipe

Complete analysis pipeline for PAR-CLIP data

pea

An integrated R toolkit for Plant Epitranscriptome Analysis

picard

A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format.

projects

In-progress projects at Harvard School of Public Health Bioinformaitcs Core

python

Python学习

python-machine-learning-book

The "Python Machine Learning (1st edition)" book code repository and info resource

renlab.github.io

rna-seq-scripts

This is a collection of small scripts built by the Lenz lab to make RNA sequencing tasks more efficient.

rnamodr

Repository for the R package RNAModR

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

scikit-learn

scikit-learn: machine learning in Python

seaborn

Statistical data visualization using matplotlib

seq2pathway

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/seq2pathway.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=seq2pathway.

sleuth

Inspect kallisto RNA-Seq output

smallrna

source code related with small RNA

star

RNA-seq aligner