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12306

12306智能刷票，订票

3d-dna

3D de novo assembly (3D DNA) pipeline

a-pro

ASTRAL for PaRalogs and Orthologs

agat

Another Gtf/Gff Analysis Toolkit

agc

Assembled Genomes Compressor

agwg-merge

allhic

ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data

allhic-1

Genome scaffolding based on HiC data in heterozygous and high ploidy genomes

ampliconarchitect

Identify one or more connected, focally amplified genomic regions to elucidate the architecture of focal amplifications such as ecDNA.

annotationpipeline-evm_based-dclab

Cantù Lab @ UC Davis - Annotation pipeline - EVM based

apple_diploid_genomes

archaicseeker2.0

ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest version of this series, ArchaicSeeker 2.0, has the following three notable improvements compared with the original version of this software. First, it can automatically determine the boundary of each introgressed sequence. Next, it is capable of tracing both known and unknown ancestral sources of a given introgressed sequence. Finally, it has the ability to reconstruct the introgression history with more sophisticated introgression models.

assemble_pipeline

Assemble and following pipeline used in wisent genome paper.

assemblytics

Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.

astral

Accurate Species TRee ALgorithm

augustus

Genome annotation with AUGUSTUS

bioinformatics-skills

生物信息学技能提升，专注于工具使用与编程

bionotes

bioscripts

store some scripts using in biology and bioinformatics

brahmanangusassemblyscripts

braker

BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes

cactus

Official home of genome aligner based upon notion of Cactus graphs

cafe

Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.

canu

A single molecule sequence assembler for genomes large and small.

cdna_cupcake

Miscellaneous collection of Python and R scripts for processing Iso-Seq data

chicken_project

chinese_indicine_pan-genome_project_scripts_and_piplines

Chinese indicine cattle pan-genome project scripts and piplines

cnvkit

Copy number variant detection from targeted DNA sequencing

comparative-annotation-toolkit

cutesv

Long read based human genomic structural variation detection with cuteSV