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Name: Xu Xizhan
Type: User
Company: Peking University
Location: Beijing,China
Name: Xu Xizhan
Type: User
Company: Peking University
Location: Beijing,China
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
Install latest version of Aspera Connect and show example how to use it for downloading sequening data.
LoFreq Star: Sensitive variant calling from sequencing data
Human Activity Recognition example using TensorFlow on smartphone sensors dataset and an LSTM RNN (Deep Learning algo). Classifying the type of movement amongst six activity categories - Guillaume Chevalier
Dockerfile for the masurca assembler
Metagenome analysis pipeline
A metagenome annotation workflow for UBC's Microbiology 405 course, Bioinformatics
Bioinformatic course on bacterial genomics and metagenomics Helsinki December 2017
Cross-disease comparison of case-control gut microbiome studies
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq
Machine Learning From Scratch. Bare bones Python implementations of Machine Learning models and algorithms with a focus on transparency and accessibility. Aims to cover everything from Data Mining to Deep Learning.
Data and analysis for NA12878 genome on nanopore
Experimental pipeline for correcting nanopore reads
De novo assembly of nanopore reads using nextflow
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
NGS course
A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor
practice repo for github lesson at NGS 2016 course
ONT assembly and Illumina polishing pipeline
Ordination lectures for Ecological Methods in Oulu
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
adapter trimmer for Oxford Nanopore reads
利用Python进行数据分析 第二版 (2017) 中文翻译笔记
The Python Code Tutorials
Python Data Science Handbook: full text in Jupyter Notebooks
Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.