yascho/seml

SEML: Slurm Experiment Management Library

SEML: Slurm Experiment Management Library

SEML is the missing link between the open-source workload scheduling system Slurm, the experiment management tool sacred, and a MongoDB experiment database. It is lightweight, hackable, written in pure Python, and scales to thousands of experiments.

Keeping track of computational experiments can be annoying and failure to do so can lead to lost results, duplicate running of the same experiments, and lots of headaches. While workload scheduling systems such as Slurm make it easy to run many experiments in parallel on a cluster, it can be hard to keep track of which parameter configurations are running, failed, or completed. sacred is a great tool to collect and manage experiments and their results, especially when used with a MongoDB. However, it is lacking integration with workload schedulers.

SEML enables you to

• very easily define hyperparameter search spaces using YAML files,
• run these hyperparameter configurations on a compute cluster using Slurm,
• and to track the experimental results using sacred and MongoDB.

In addition, SEML offers many more features to make your life easier, such as

• automatically saving and loading your source code for reproducibility,
• easy debugging on Slurm or locally,
• automatically checking your experiment configurations,
• extending Slurm with local workers,
• and keeping track of resource usage (experiment runtime, RAM, etc.).

Get started

To get started, install SEML either via pip:

pip install seml

or conda (the conda version may be outdated, we highly recommend the pypi version!):

conda install -c conda-forge seml

Then configure your MongoDB via:

seml configure

For convenience, you may create your first SEML project via:

# initialize the default template in the 'new_project' folder.
seml project init -t default new_project

in an empty directoy. SEML will automatically create a python package for you.

SSH Port Forwarding

If your MongoDB is only accessible via an SSH port forward, SEML allows you to directly configure this as well if you install the ssh_forward dependencies via:

pip install seml[ssh_forward]

It remains to configure the SSH settings:

seml configure --ssh_forward

Development

If you want to develop seml please clone the repository and install it via

pip install -e .[dev]

and install pre-commit hooks via

pre-commit install

Documentation

Documentation is available in our docs.md or via the CLI:

seml --help

Example

See our simple example to get familiar with how SEML works.

CLI completion

SEML supports command line completion. To install this feature run:

seml --install-completion {shell}

If you are using the zsh shell, you might have to append compinit -D to the ~/.zshrc file (see this issue).

Slurm version

SEML should work with Slurm 18.08 and above out of the box. Version 17.11 and earlier do not have a SIGNALING job state, which you have to remove from the SLURM_STATES defined in SEML's settings (seml/settings.py). Earlier versions have not been tested and might have other issues.

Contact

Contact us at [email protected], [email protected], or [email protected] for any questions.

Cite

When you use SEML in your own work, please cite the software along the lines of the following bibtex:

@software{seml_2023,
  author = {Z{\"u}gner, Daniel and Gasteiger, Johannes and Gao, Nicholas and Dominik Fuchsgruber},
  title = {{SEML: Slurm Experiment Management Library}},
  url = {https://github.com/TUM-DAML/seml},
  version = {0.4.0},
  year = {2023}
}

Copyright (C) 2023 Daniel Zügner, Johannes Gasteiger, Nicholas Gao, Dominik Fuchsgruber Technical University of Munich