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algorithm

Algorithm

bioconda-recipes

Conda recipes for the bioconda channel.

blockchain_guide

Introduce blockchain related technologies, from theory to practice with bitcoin, ethereum and hyperledger.

cdna_cupcake

Miscellaneous collection of Python and R scripts for processing Iso-Seq data

chatgpt_academic

科研工作专用ChatGPT拓展，特别优化学术Paper润色体验，支持自定义快捷按钮，支持自定义函数插件，支持markdown表格显示，Tex公式双显示，代码显示功能完善，新增本地Python/C++/Go项目树剖析功能/项目源代码自译解能力，新增PDF和Word文献批量总结功能

clairvoyante

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

claragenomicsanalysis

SDK for GPU accelerated genome assembly and analysis

cutesv

Long read based human genomic structural variation detection with cuteSV

deepsv

Calling deletions using deep convolutional neural

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

desalt

deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads

freehic

FreeHi-C pipeline for high fidelity Hi-C data simulation.

gatk

Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository

lamsa

Long Approximate Matches-based Split Aligner

memusg

A 'time'-like utility for Unix that measures peak memory usage

mintreading

English reading everyday

msasindel

small variants detection based on multiple sequence alignment

nucleus

Python and C++ code for reading and writing genomics data.

pbbioconda

PacBio Secondary Analysis Tools on Bioconda

psi-caller

a lightweight short read-based variant caller with high speed and accuracy

publrasm

readme

README文件语法解读，即Github Flavored Markdown语法介绍

rmetl

rMETL - realignment-based Mobile Element insertion detection Tool for Long read

rnaseqeval

A tool for evaluating RNA seq mapping

sksv

ultrafast structural variation detection from circular consensus sequencing reads

sniffles

Structural variation caller using third generation sequencing

sqanti2

Private repo for Liz's modified SQANTI

ssw_aligner

Python implementation of Striped Smith-Waterman Algorithm

sv-benchmark

Public Benchmark of Long-Read Structural Variant Caller on ONT PromethION Data