ydliu-hit / sksv Goto Github PK
View Code? Open in Web Editor NEWultrafast structural variation detection from circular consensus sequencing reads
License: MIT License
ultrafast structural variation detection from circular consensus sequencing reads
License: MIT License
Hi,
I'm trying to test your tool on several datasets, and it runs smoothly on the fastq inputs.My only concern is that, is there anyway to run SKSV on some already aligned results? Like bam files from NGMLR or minimap2.
Thank you.
您好,我最近正尝试在一些Longread数据上测试您的SKSV软件。依照您Readme中的说明,我成功在fastq文件上运行了SKSV,不过对于一些数据,我可能希望能跳过SKSV的align步骤,而使用我已有的NGMLR和minimap2 align出的bam文件作为sv call的输入。SKSV有可能在bam文件上完成SV call的操作吗?您的文章中提到SVSK在call步骤中采用了cuteSV的部分**,据我了解cuteSV可以接受bam文件输入,但是似乎SKSV的call步骤输入是svseg文件。svseg和bam可以互相转换吗?
非常感谢
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.