zenodo/zenodo

Research. Shared.

Zenodo - Research. Shared.

Zenodo, a CERN service, is an open dependable home for the long-tail of science, enabling researchers to share and preserve any research outputs in any size, any format and from any science.

Powered by Invenio

Zenodo is a small layer on top of Invenio, a ​free software suite enabling you to run your own ​digital library or document repository on the web.

Installation

See INSTALL.rst

Developer documentation

See https://zenodo.readthedocs.io/

License

Copyright (C) 2009-2017 CERN.

Zenodo is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

Zenodo is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with Zenodo; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307, USA.

In applying this license, CERN does not waive the privileges and immunities granted to it by virtue of its status as an Intergovernmental Organization or submit itself to any jurisdiction.

Zenodo (R)

Zenodo (R) and the Zenodo logo are trademarked by CERN and are not covered by the GPLv2 license. Thus, if you instantiate Zenodo on your own servers you must change the branding to your own.

Please consider creating your own overlay to Invenio and look at Zenodo for inspiration.

zenodo's Issues

infrastructure: monitoring & alarms

Enhance existing monitoring and alarms integration in new CERN monitoring framework.

ui: record's keywords wrapping

There is a problem with displaying keywords for a few records:

Bad example:

Good example:

I believe that this problem occurs when user put all the keywords in one filed, separated by comma (instead of using Add another keyword option).

communities: auto-accept uploads from curators

sharing: share community data model

• CommunitiesTeam Table addition
  • columns + relationships
  • upgrade script

communities: default sort ordering

• Set sort default sort order for community.
• Sort by default order on collection frontpage.

ui: whitespace removal on frontpage

Sharing (communities and get a link)

• Get a link (i.e. confidential peer-review).
• Community sharing (i.e. view of closed access records).
• Community UI revamp

CC0 waiver in the T&C

The T&C (https://zenodo.org/terms) describe CC0 as a licence, but it is actually a waiver - we should correct the text, and also make the word CC0 a hyper link to the creative-commons site (http://creativecommons.org/publicdomain/zero/1.0/)

Versioning support

• Versioned DOIs (one global DOI pointing to all releases, and one DOI per version).
• Deposit UI and REST API support.
• Move to new documents module.
• Move storage backend.

previewer: enable CSV file previewer

records: journal of brief ideas logo

installation: double requirements given in base/dev.requirements.txt

Invoking this (zenodo/invenio:pu-zenodo | zenodo/zenodo:master):
pip install -r requirements.txt --exists-action i

Produce this:
Double requirement given: ipython==2.3.0 (from -r dev.requirements.txt (line 26)) (already in ipython==2.3.0 (from -r base.requirements.txt (line 97)), name='ipython') Storing debug log for failure in /home/adrian/.pip/pip.log
and
Double requirement given: ipdb==0.8 (from -r dev.requirements.txt (line 26)) (already in ipdb==0.8 (from -r base.requirements.txt (line 96)), name='ipdb') Storing debug log for failure in /home/adrian/.pip/pip.log

Shall we remove the ipdb and iptyhon requirements from base.requirements.txt?

records: export pages should include record title

Related to #80

docs: document how to link record to code repository

previewer: csv previewer should not load big csv files

Due to performance issue with d3.js CSV rendering, we should not render CSV files bigger than X kb/mb but instead ask the user to actively press a load button.

search: move to elastic search

FundRef integration

• Harvesting and REST API via Invenio-OpenAIRE
• Deposit integration

formatter: bibtex export update

Tombstone pages for removed records

Create tombstone page for a record that was removed.

github: release via tags

Community curation

• Allow multiple curators
• Allow curators to edit metadata.

restapi: records REST API

• JSON-LD export format

outreach: help guides

Improved documentation for end-users.

Update release title on github should also update DOI ?

What do you think ?

external: google indexing

Investigate google indexing of xd, md and hm formats instead of record page.

base: enable new pages module for easier static page editing

sharing: record link mockups

• record view (get link)
• user menu view (my links)
• settings view (my link -> list view)

communities: subcommunities

• End-user browsing of subcommunities
  • Logos per subcommunity?
  • Clearly visible collection hierarchy when browsing a community.
• Management of subcommunities tree.
• Integration with teams and permissions.

Related to branding of communities in #104

sharing: record link data model

Wrong DOI URL?

@lnielsen-cern Have a look at the DOI url on this page: https://zenodo-dev.cern.ch/deposit/4929/

It's redirects to the wrong record ...

DOI badge returns 500

Internal error ... maybe the celery task is hung up?

tests: jasmine + selenium testing

stats: expose metrics via records rest api

restapi: better error response messages

deposit: alternate identifiers field.

deposit: fix WTForms 2.0 deprecation warnings

../local/lib/python2.7/site-packages/wtforms/ext/sqlalchemy/__init__.py:7: DeprecationWarning: wtforms.ext.sqlalchemy is deprecated, and will be removed in WTForms 3.0. Instead transition to the excellent WTForms-Alchemy package: https://github.com/kvesteri/wtforms-alchemy
  DeprecationWarning

.../local/lib/python2.7/site-packages/wtforms/fields/simple.py:23: DeprecationWarning: The TextField alias for StringField has been deprecated and will be removed in WTForms 3.0
  DeprecationWarning

sharing: share community mockups

• teams list view
• team detailed view
• team settings view
• people list view

auth: AAI authentication (eduGAIN)

Update email notifications with additional fields

Add community name to title
Add submitter name below url

github: link versions via metadata

search: expose Invenio advanced search form

tests: travis build failure

search: facet search problem

Facet not showing when not logged in: https://zenodo.org/search?ln=en&p=test&action_search=

records: large title makes download and preview buttons disappear

http://dx.doi.org/ renders too soon

When a release has been made without sufficient metadata, the DOI shouldn't be created.

Despite, a URL is presented on the Zenodo's GitHub page pointing to a non-existent entry on dx.doi.org.

communities: featured community UI problems

There are a few things that need to be done:

• 1. Proper string translation
• 2. Fix the href attribute of the Curate button.

grants: celery task to fetch grants from openaire

deposit: related identifiers relations (hasPart, isPart)

restapi: documentation update

• Better oauth documentation.
• Advertise sandbox environment.
• Automatic cleaning of sandbox environment.
• Records REST API documentation.

profile: allow editing of nickname and email address