Comments (1)
zhangrengang
commented on September 20, 2024
1
@awesomedeer The config file for Medicago sativa in the ms:
chr1.1 chr1.2 chr1.3 chr1.4
chr2.1 chr2.2 chr2.3 chr2.4
chr3.1 chr3.2 chr3.3 chr3.4
chr4.1 chr4.2 chr4.3 chr4.4
chr5.1 chr5.2 chr5.3 chr5.4
chr6.1 chr6.2 chr6.3 chr6.4
chr7.1 chr7.2 chr7.3 chr7.4
chr8.1 chr8.2 chr8.3 chr8.4
The parameters used: -q 50 -baseline 2 -nsg 2.
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Related Issues (20)
- Changing mutation rate HOT 1
- Invalid specifier: '>=3.6:' HOT 1
- Only one pair of homologous chromosomes were not phased HOT 5
- matplotlib raise RuntimeError ('Invalid DISPLAY variable') HOT 2
- Unbalanced of chromosomes number and differential kmers number among subgenomes HOT 1
- `TEsorter` cannot find `rexdb` in Singularity container HOT 3
- Singularity container fails if environmental variable `R_LIBS_USER` is set HOT 2
- No differential kmers HOT 2
- ValueError: All singletons are not allowed HOT 1
- ValueError: 0 kmer with fold > 2. Please reset the filter options. HOT 1
- cannot allocate memory HOT 13
- 亚基因组分析 HOT 2
- Getting location of subgenome specific TEs HOT 2
- Suggestion for specific settings to improve subphasing HOT 6
- kmer 13 or less gives a lot of broken pipe errors HOT 5
- 两套单倍型分配不平均 HOT 2
- OSError: [Errno 12] Cannot allocate memory HOT 2
- OSError: /usr/lib/libdrmaa.so.1.0: cannot open shared object file: No such file or directory HOT 1
- FileNotFoundError: [Errno 2] No such file or directory: 'sg.config''
- OSError: [Errno 12] Cannot allocate memory HOT 8
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