zhujack/geometadb

geometadb's Issues

404 database not found

Getting 404 error after executing

geometadbfile <- getSQLiteFile()

Getting error while downloading the latest SQLite file

Hi @zhujack ,

I am trying download the latest SQLite file, however I keep getting the following error:

trying URL 'https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz' Error in download.file(url_geo, destfile = localfile, mode = "wb") : cannot open URL 'https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz' In addition: Warning message: In download.file(url_geo, destfile = localfile, mode = "wb") : InternetOpenUrl failed: 'The server name or address could not be resolved' Error in download.file(url_geo, destfile = localfile, mode = "wb") : cannot open URL 'https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz' In addition: Warning message: In download.file(url_geo, destfile = localfile, mode = "wb") : InternetOpenUrl failed: 'The server name or address could not be resolved'

I have installed GEOmetadb version: 1.49.3. Here is my session info:

R version 4.0.2 (2020-06-22) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows >= 8 x64 (build 9200) Matrix products: default locale: [1] LC_COLLATE=English_United States.1252 [2] LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] Rcpp_1.0.8.3 pillar_1.8.1 compiler_4.0.2 [4] remotes_2.4.2 tools_4.0.2 bit_4.0.4 [7] RSQLite_2.2.12 memoise_2.0.1 lifecycle_1.0.1 [10] tibble_3.1.6 pkgconfig_2.0.3 rlang_1.0.2 [13] DBI_1.1.3 cli_3.2.0 GEOquery_2.58.0 [16] curl_4.3.2 yaml_2.2.1 parallel_4.0.2 [19] fastmap_1.1.0 dplyr_1.0.8 xml2_1.3.3 [22] generics_0.1.3 vctrs_0.4.1 hms_1.1.2 [25] bit64_4.0.5 tidyselect_1.1.2 glue_1.6.2 [28] Biobase_2.50.0 R6_2.5.1 fansi_1.0.3 [31] limma_3.46.0 GEOmetadb_1.49.3 purrr_0.3.4 [34] readr_2.1.2 tzdb_0.3.0 tidyr_1.2.0 [37] blob_1.2.3 magrittr_2.0.3 ellipsis_0.3.2 [40] BiocGenerics_0.36.1 assertthat_0.2.1 utf8_1.2.2 [43] cachem_1.0.6