aomlomics/mitohelper

Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies

mitohelper's Issues

Duplicated accessions in mitofish.12S.May2023.tsv

Hi,

I found 255 duplicated accessions in the file mitofish.12S.May2023.tsv.
After taking a closer look at some duplicates, it seems that one of the sequence is the 12S and the second is a wider sequencing encompassing the 12S.

awk 'BEGIN{FS="\t"; OFS="\t"}{idents[$1]++}END{for (i in idents) {counts[idents[i]]++}; for (j in counts) print j, counts[j]}' mitofish.12S.May2023.tsv
1 47818
2 255

Any idea ?

Thank's