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anchre

Code for the Gates/RSA methods bakeoff

bellejs

Generate BEAST XML analysis files using a BEAUTI-like JavaScript interface

bioid

Source files for online resources of Bioinformatics of Infectious Diseases course

bioinfo

Assorted collection of bioinformatic scripts

constellations

covid19canada

Epidemiological Data from the COVID-19 Outbreak in Canada

creative-commons-markdown

Markdown-formatted Creative Commons licenses

dynamics-evolution-indico

Indico customization files for dynamicsevolution.org

flu_frequencies

ggfree

ggplot2-style plots with base R graphics

gotoh2

Lightweight and customizable Python/C extension for pairwise alignment of genetic sequences using the Gotoh algorithm

hyphy

HyPhy: Hypothesis testing using Phylogenies

iupmbayes

Bayesian estimation of infectious units per million (IUPM) from viral outgrowth assay-based sequence data

kamphir

Phylogenetic inference using a tree-shape kernel in an Approximate Bayesian Computation framework

latex-cv

A LaTeX CV with minor tweaks to moderncv template

makebst

A small web script (JS and PHP) for interfacing with Patrick Daly's custom-bib package for customizing LaTeX bibliography styles

mathsheets.js

A simple JavaScript/HTML5 web applet for generating basic math exercise sheets

netabc

Fitting contact network models to phylogenies with kernel-ABC

pangolin

Software package for assigning SARS-CoV-2 genome sequences to global lineages.

phydynr

pixelcraft

JavaScript code for converting video game sprite PNGs to cross-stitch patterns

preprints

Public access to TeX, scripts and data for manuscripts in preparation

sc2rf

SARS-Cov-2 Recombinant Finder for fasta sequences

sealign

SeALign is an attempt to port Andrew Rambaut's Se-Al alignment editor to HTML5 Canvas and Javascript

slides

spacewar-js

JavaScript implementation of the DOS game SpaceWar

tex-cihr

A LaTeX template for CIHR Project Grant applications

treeshapekernel

A kernel function for comparing the shapes of phylogenetic trees.