artpoon / sc2rf Goto Github PK
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SARS-Cov-2 Recombinant Finder for fasta sequences
License: MIT License
This project forked from lenaschimmel/sc2rf
SARS-Cov-2 Recombinant Finder for fasta sequences
License: MIT License
for example, args
and reference
are common variable names
Lines 511 to 516 in 5af5693
prevents user from calling main script from outside project directory
art@Wernstrom git % python3 sc2rf/sc2rf.py
Traceback (most recent call last):
File "/Users/art/git/sc2rf/sc2rf.py", line 987, in <module>
main()
File "/Users/art/git/sc2rf/sc2rf.py", line 73, in main
mappings = read_mappings('mapping.csv')
File "/Users/art/git/sc2rf/sc2rf.py", line 875, in read_mappings
with open(path, newline='') as csvfile:
FileNotFoundError: [Errno 2] No such file or directory: 'mapping.csv'
@ktmeaton - would JSON work? It seems that match_sets
is the primary output and is a dictionary
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