bbglab/muts-needle-plot

A needle plot for mutation data

Mutations Needle Plot (muts-needle-plot)

A needle-plot (aka stem-plot or lollipop-plot) plots each data point as a big dot and adds a vertical line that makes it appear like a needle.

This software is citable! Different citation styles available at *http://dx.doi.org/*+DOI

Availability

• Live examples at the BioJS-registry: http://biojs.io/d/muts-needle-plot
• Installable JavaScript library at npm-registry: https://www.npmjs.org/package/muts-needle-plot
• Source code at GitHub: https://github.com/bbglab/muts-needle-plot

Examples (snippets)

This library is can be found as npm-library in the BioJS registry.

Thus examples can bee seen at the biojs.net registry: http://biojs.net/

Installation

Install npm

If you want to install the latest release MutNeedles on your machine, you need to have npm installed.

• Install npm or 'NodeJs', where npm is included.
  • Check out the 'How to install npm' blog entry at: http://blog.npmjs.org/post/85484771375/how-to-install-npm

Install Mutations Needle Plot (muts-needle-plot)

Once you have npm installed you may install the latest release (from the npm-repository) or the develop-version (the code from GitHub).

• Latest npm release:

  • npm install muts-needle-plot. This command will retrieve the latest release from the npm-repository (https://www.npmjs.org/)
  • Enter the created directory cd node_modules/muts-needle-plot.
  • Run the examples (snippets) with the command npm run sniper and access them at the url http://localhost:9090/snippets/ in your browser

• Latest develop version from GitHub

  • Clone the MutNeedles repository from your computer: git clone https://github.com/bbglab/muts-needle-plot.git
  • Enter the newly created code dir and install it with npm: npm install
  • Run the examples (snippets) with the command npm run sniper and access them at the url http://localhost:9090/snippets/ in your browser

Proxy

Watch out, if you are sitting behind a (corporate) proxy, you should communicate this to npm as follows before trying to install the libraries:

npm config set proxy http://proxy.company.com:8080
npm config set https-proxy http://proxy.company.com:8080

Issues

Please report issues at: https://github.com/bbglab/muts-needle-plot/issues

Authors

Michael Schroeder

• https://github.com/mpschr