bbglab/muts-needle-plot

A needle plot for mutation data

muts-needle-plot's Issues

Plotting mutations on upstream of genes

Hi,
Is it possible to plot needles on upstream of genes? Such as the promoter region?

Need to clarify licence and/or add LICENCE file

It would be very nice and useful if @mpschr and contributors were able to clarify licence for this software/repository - I think that more users would choose this module and more PRs will be issued if developers would know what the licence is and what is a general vision for development of this module. If the licence is somewhere, it might be a good idea to create a LICENCE file in the main directory of repository so it would be more visible.

Kind regards and thanks for creating this great piece of software!

Is not possible to have multiple plots in the same page

The "needles" of the second plot are drawn on the first plot.

Download Image Option

Download image option. Either SVG, PNG or both

Seem to be missing legend?

Think, I've got it running ok but the legend does not appear to be there when I select an area with the mouse?

i also had to change the reference in package.json to biojs-sniper to sniper? i used npm to install.

Regions in x axis are not displayed in plot when length = 1

        plotConfig = {
            maxCoord :      regions_data[selected_gene]['maxcoord'],
            minCoord :      0,
            height:         450,
            targetElement : "mutsplot_chart",
            mutationData:   regions_data[selected_gene]['muts'],
            regionData:     regions_data[selected_gene]['regions'],
            colorMap:       colorMap,
            legends:        legends
                    };

throws error with multiple plots on a page

I haven't traced the root cause of this, but a quick look with eslint shows dozens of globals. I suggest adding eslint, using 'use strict', and eliminating the globals.

Add / remove data

Provide possibility to add / remove mutations and regions and the plot updates itself

biojs snippets

I just saw that you published this nice component. Nice!

Also I saw that the "snippets" documentation isn't pefect yet, so I just post here what I saw in your package - maybe it helps you.

• if you want the snippets to work on JSBin etc. the link needs to be relative (data -> ./data). Otherwise there is no way for the registry to fix the path
• the sniper "magic" is that it creates a default html with one div (if one doesn't specify a html page)

var yourDiv = document.getElementById('zg036315rk9');

So if you use the string "yourDiv" d3 won't find the injected element and d3 will use document.body as fallback. As yourDiv is a DOM reference you can pass it directly to D3 like target: yourDiv, or you can also get its id with yourDiv.id

event hooks

Hi, nice lib! Starting to put it to use in a project. What would be the best practice for hooking into the drag-end event, or any event really? I'd like to fire off another custom function that uses the selected coords.
cheers,
:Larry

including in webpack build

Is there a recommended way to include this lib from webpack? Doing a simple require() results in dependencies (d3-tip) not being available at run-time.