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100-days-of-ml-code

100 Days of ML Coding

100-daysof-code-datascience

2014-dmel-pipeline

Drosophila melanogaster pooled sample variant calling pipeline

2020_scworkshop

Code and data repository for the 2020 physalia course on single cell RNA sequencing.

2021_presentations

2024_isb_workshop_practical_methods_in_spatial-omics

30-days-of-python

30 days of Python programming challenge is a step by step guide to learn the Python programming language in 30 days. This challenge may take up to 100 days, follow your own pace.

academic-dsi

academic-website-template

A simple template for an academic website using Bootstrap

academicpages.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

activepathways

Integrative pathway enrichment analysis of multivariate omics data

ad-meta-analysis

adv-r

Advanced R: a book

advanced-shiny

🤹 Shiny tips & tricks for improving your apps and solving common problems

afcmheatmap

agat

Another Gff Analysis Toolkit

agg

gvcf aggregation tool

alevin-fry

🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

aligner_benchmark

alpine

Modeling and correcting fragment sequence bias for RNA-seq

amazon-sagemaker-examples

Example 📓 Jupyter notebooks that demonstrate how to build, train, and deploy machine learning models using 🧠 Amazon SageMaker.

analyticscourse

Prework and In Course Assignments for Analytics Course

anvilworkshop

AnVIL/Terra workshop for Bioconductor conference

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2017

appyter-catalog

A catalog of appyter notebooks

archr

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

armt

arnapipe

arpir

Automatic RNA-Seq Pipelines with Interactive Report

arvados

An open source platform for managing and analyzing biomedical big data