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lanyon-plus

Based on lanyon - A content-first, sliding sidebar theme for Jekyll. Demo at

leader_et_al

liger

R package for integrating and analyzing multiple single-cell datasets

limmade2

An R package to analyze differential expression via LIMMA functions

littler

A scripting and command-line front-end for GNU R

livecode

lncrna-screen

lncRNA-screen

lncrnakb

Scripts for analyzing data displayed and deposited on the long non-coding RNA knowledgebase (lncRNAKB)

lncscore

A python package for the identification of lncRNA from the assembled novel transcripts

lncscore-java

Prediction of lncRNA from RNA-Seq data

locuszoom

A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.

long-rna-seq-pipeline

STAR based ENCODE Long RNA-Seq processing pipeline

lung_cancer_microbiome

lux

Automatically visualize your pandas dataframe via a single print! 📊 💡

maca

MACA: Marker-based automatic cell-type annotation for single cell expression data

machine-learning-in-biotechnology-and-life-sciences

Machine Learning in Biotechnology using Python, published by Packt

machine_learning_complete

macs

MACS -- Model-based Analysis of ChIP-Seq

mafdash

MAFDash: R Package to Easily Create an HTML Dashboard to Summarize and Visualize Data from Mutation Annotation Format (MAF) File

maftools

Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

mageck

Experimental source code for MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout)

maier_et_al_nature_2020

This repository contains scripts used for analysis and figure generation in Maier, B., Leader, A.M., Chen, S.T. et al. A conserved dendritic-cell regulatory program limits antitumour immunity. Nature 580, 257–262 (2020). https://doi.org/10.1038/s41586-020-2134-y

marathon

Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny

markdown

(R)Markdown reference

marsh_et-al_2020_scrnaseq_dissociation_artifacts

Code to reproduce analysis objects for the data contained in https://www.biorxiv.org/content/10.1101/2020.12.03.408542v1

mast

Tools and methods for analysis of single cell assay data in R

master_of_pores

Nextflow pipeline for analysis of direct RNA Nanopore reads

mdaur

Scripts and data for book: Molecular Data Analysis using R

mdsr-book.github.io

Website for Modern Data Science with R book

medical_genomics_course

Material for medical genomics course