genomicsnx Goto Github PK

pepr

a peak-calling and differential analysis tool for replicated ChIP-Seq data

peptide-shaker

Interpretation of proteomics identification results

perceptions

Perceptions of Probability and Numbers

performance

:muscle: Models' quality and performance metrics (R2, ICC, LOO, AIC, BF, ...)

perseus-plugins

The perseus software for the statistical analysis of omics data (http://www.perseus-framework.org/) has a plugin architecture. Here you find the code necessary to develop your own plugins.

pfb2017

pfb2019

Programming for Biology 2019

phantompeakqualtools

Automatically exported from code.google.com/p/phantompeakqualtools

pharmaverse.workshop.phuseus2022

pharmaverse - PHUSE US Connect 2022 Workhop

pheatmap

Pretty heatmaps

pheweb

A tool to build a website to browse hundreds or thousands of GWAS.

phypapers

info and 'how to' on setting up twitterbots to post academic papers

physalia-lcwgs

Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 11-14, 2021

physalia_adaptation_course

physalia_envmetagenomics_2022

Environmental metagenomics, Spring 2022, Physalia Courses

pigx_bsseq

bisulfite sequencing pipeline from fastq to methylation reports

pigx_chipseq

Pipeline for Analysis of ChIP-Seq data

pigx_rnaseq

Pipeline for RNAseq

pimp-my-rmd

A few tips about R markdown

pindel

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.

pipeline

bradner lab computation pipeline scripts

pipeline5

pipeliner

Pipeliner Program

piper

A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper

piranha

Piranha is a peak-caller for CLIP- and RIP-seq data

pivottable

Open-source Javascript Pivot Table (aka Pivot Grid, Pivot Chart, Cross-Tab) implementation with drag'n'drop.

planemo

Command-line utilities to assist in developing tools for the Galaxy Project.

plateeffects2016

Code and manuscript files for Aaron's plate effect paper.

pmr

popgen-biobank

The GitHub repository associated with the following paper: LINK