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Vang Le's Projects

abra icon abra

Assembly Based ReAligner

aligngraph icon aligngraph

Algorithm for secondary de novo genome assembly guided by closely related references

arsd icon arsd

This is a collection of modules that I've released over the years. Most of them stand alone, or have just one or two dependencies in here, so you don't have to download this whole repo. You may find some ddoc here:http://arsdnet.net/ddoc/ or you can always ask me for help.

augur icon augur

Pipeline components for real-time phylodynamic analysis

auspice icon auspice

Web app for visualizing pathogen evolution

awesome icon awesome

:sunglasses: Curated list of awesome lists

awesome-c icon awesome-c

A curated list of awesome C frameworks, libraries, resources and other shiny things. Inspired by all the other awesome-... projects out there.

bcbio-nextgen icon bcbio-nextgen

Best-practice pipelines for fully automated high throughput sequencing analysis

beagle-lib icon beagle-lib

general purpose library for evaluating the likelihood of sequence evolution on trees

bedops icon bedops

BEDOPS: high-performance genomic feature operations

bedtools icon bedtools

A powerful toolset for genome arithmetic.

bio7ticscatalog icon bio7ticscatalog

A catalog of interesting bioinformatics software, mostly those available on Github that I work with

bioawk icon bioawk

BWK awk modified for biological data

biod icon biod

Bioinformatics library in D. (utils for working with SAM, BAM, SFF formats)

bioscala icon bioscala

Bioinformatics for the Scala programming language

bscripts icon bscripts

Collection of handy scripts for bioinformatic work

chanjo icon chanjo

Chanjo provides a better way to handle sequence coverage data in clinical sequencing.

cnvnator icon cnvnator

a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads

courses icon courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

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