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Vang Le's Projects

vcflib icon vcflib

a simple C++ library for parsing and manipulating VCF files, + many command-line utilities

viral-ngs-deploy icon viral-ngs-deploy

Deployment files related to https://github.com/broadinstitute/viral-ngs

viscap icon viscap

VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number variants (CNVs) from targeted next-generation sequencing data.

wisecondor icon wisecondor

WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using whole-genome data. NEWS: NOW INCLUDES AN INTERACTIVE RESULT BROWSER.

word-count icon word-count

Example project we use in the reproducibility and documentation lessons.

xsq-convert icon xsq-convert

xsq-convert converts Solid XSQ files to csfasta/qual files

xsq-info icon xsq-info

xsq-info reads and prints information (metadata, number of reads) from a XSQ file

xsqconverter icon xsqconverter

Converts SOLID XSQ/HDF files to fastq or csfasta files.

xsqutils icon xsqutils

Utilities for converting SOLiD XSQ files

zsh icon zsh

Mirror of the Z shell source code repository.

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