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Vang Le's Projects

htslib icon htslib

C library for high-throughput sequencing data formats

ibus icon ibus

Intelligent Input Bus for Linux/Unix

iopipe icon iopipe

D language library for modular io

kat icon kat

The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.

klib icon klib

A standalone and lightweight C library

klibd icon klibd

Port of klib https://github.com/attractivechaos/klib to play with D

krona icon krona

Interactively explore metagenomes and more from a web browser.

llvm icon llvm

Mirror of official llvm git repository located at http://llvm.org/git/llvm. Updated every five minutes.

macs icon macs

MACS -- Model-based Analysis of ChIP-Seq

mash icon mash

Fast genome and metagenome distance estimation using MinHash

metarep icon metarep

METAREP: JCVI Metagenomics Reports - an open source tool for high-performance comparative metagenomics

ncov icon ncov

Nextstrain build for novel coronavirus SARS-CoV-2

ngcgh icon ngcgh

Tools for producing pseudo-cgh of next-generation sequencing data

ngseasy icon ngseasy

Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

ngsutils icon ngsutils

Tools for next-generation sequencing analysis

oh-my-zsh icon oh-my-zsh

A community-driven framework for managing your zsh configuration. Includes 180+ optional plugins (rails, git, OSX, hub, capistrano, brew, ant, php, python, etc), over 120 themes to spice up your morning, and an auto-update tool so that makes it easy to keep up with the latest updates from the community.

org-babel-examples icon org-babel-examples

Examples using emacs org mode babel inline source code with different backend languages

pangolin icon pangolin

Software package for assigning SARS-CoV-2 genome sequences to global lineages.

per-directory-history icon per-directory-history

Per directory history for zsh, as well as global history, and the ability to toggle between them with ^G.

phobos icon phobos

The standard library of the D programming language

picard icon picard

A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format.

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