incomplete record

[bioinfologics]

incomplete record

[ljyanesm]

Hi,

Are you still experiencing this error? The error message you mention can happen not only if the files are corrupt but also if there were issues with the filesystem whilst reading them.

Kindly,

[jdmontenegro]

Hi. I guess that must have happened, because I resubmitted with the original file and it worked correctly this time. The only problem was the amount of memory used. It used more than 750gb before next extracting kmers, do you have any development branch that extracts kmers immediately after reading the files and does not load de the reads into memory? Or is it essential to keep the reads in memory? Regards, Juan Montenegro

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On 13 Apr 2017 1:18 AM, "Luis Yanes" ***@***.***> wrote: Hi, Are you still experiencing this error? The error message you mention can happen not only if the files are corrupt but also if there were issues with the filesystem whilst reading them. Kindly, — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#22 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AI8luv-z_YqIUJta6i_UpYFrviYW4BPTks5rvOsugaJpZM4M5fXO> .

[ljyanesm]

Hi,

The master branch has a mode for using disk batches, the "-d" flag can help reduce the maximum required memory. A value of 16 should be enough.

Kindly,
Luis