Comments (2)
Just in case this would be helpful, I was able to install w2rap-contigger by installing gcc6 using conda:
conda create -n w2rap -c omgarcia gcc-6
conda activate w2rap
cmake -D CMAKE_CXX_COMPILER=g++ .
make -j 4
from w2rap-contigger.
An alternative solution is editing the make to not include the variant calling sources given that they aren't required to generate the contigs. We have done that on the latest but unstable branch.
from w2rap-contigger.
Related Issues (20)
- Step 1 Speed for w2rap contigger HOT 3
- Illegal involution value HOT 3
- Step 3 crashed HOT 1
- K parameter determination HOT 5
- denoising Illumina reads HOT 1
- Check step2 counting using large number of batches
- Having trouble with preoccupied kmers HOT 7
- Resume checkpoints in w2rap-contigger? HOT 2
- errors when compiling with gcc-8 in MacOS HOT 1
- w2rap-contigger memory issues / advices to run w2rap HOT 9
- Segfault during Step 6: removing small components HOT 7
- Read lengths and large K HOT 1
- Installation error HOT 6
- Segmentation fault in Step 5 HOT 1
- Can w2rap-contigger use for non-PCR-free NGS assembling? HOT 1
- More details on w2rap-contigger step 5 needed - run with 100bp PE short reads (Illumina) HOT 1
- No error message (34045 Aborted) HOT 2
- Step 3 crash HOT 1
- help with compiling on Mac OS
- step2 crashed
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from w2rap-contigger.