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lyy005 avatar lyy005 commented on August 12, 2024 3

Just in case this would be helpful, I was able to install w2rap-contigger by installing gcc6 using conda:

conda create -n w2rap -c omgarcia gcc-6
conda activate w2rap

cmake -D CMAKE_CXX_COMPILER=g++ .
make -j 4

from w2rap-contigger.

ljyanesm avatar ljyanesm commented on August 12, 2024

An alternative solution is editing the make to not include the variant calling sources given that they aren't required to generate the contigs. We have done that on the latest but unstable branch.

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