Name: Daniel Blankenberg
Type: User
Company: Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic
Bio: Hiring postdocs and devs
https://blankenberglab.org/jobs
Twitter: dblankenberg
Location: Cleveland, OH, USA
Blog: https://dblankenberg.org/
Daniel Blankenberg's Projects
An analysis and visualization platform for 'omics data
Galaxy Interactive Environment for Anvi'o
Interactive publications lists with JavaScript + Bibtex
A python library for interacting with CloudMan and Galaxy API
Conda recipes for the bioconda channel.
Utilities for building and managing bioconda recipes
Official git repository for Biopython (converted from CVS)
BiosStar Q&A
blend4j is a JVM partial reimplemenation of the Python library bioblend for interacting with Galaxy, CloudMan, and BioCloudCentral.
🍺 The missing package manager for macOS (or Linux)
cache packages permanently
Repository seeded with source code from http://weizhongli-lab.org/cd-hit/cd-hit-auxtools-v0.5-2012-03-07-fix.tar.gz
Galaxy Interactive Tool
Library for reading the output from CLI help commands, and generating machine readable schemas (CWL etc)
Easily create compute clusters on the Cloud.
X things you should take into consideration if you code for big data analysis
build and test recipes for conda
Recommendations to containerize your bioinformatics software
The CernVM File System
Training ground for aspiring Galaxy skywalkers
DataBaseApp
A collaboratively written review paper on deep learning, genomics, and precision medicine
Interact with the DeepSearch platform for new knowledge explorations and discoveries
:whale: :microscope: :books: Jupyter running in a docker container. This image can be used to integrate Jupyter into Galaxy
Library for managing Galaxy plugins - tools, index data, and workflows.
Collaborative Text Editor Powered by Firebase
Galaxy wrappers for FreeBayes starting from version 0.9.14