Name: Daniel Blankenberg
Type: User
Company: Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic
Bio: Hiring postdocs and devs
https://blankenberglab.org/jobs
Twitter: dblankenberg
Location: Cleveland, OH, USA
Blog: https://dblankenberg.org/
Daniel Blankenberg's Projects
Data intensive biology for everyone.
BETA Galaxy Github repository, may be destroyed and recreated if post-conversion problems are found (but post-conversion commits on this repo will be reapplied to any recreations). Scary disclaimer aside, so far so good! Full details:
Deprecated repository GOTO https://github.com/galaxyproject/galaxy
Build components for CloudMan, Galaxy on the Cloud, or Galaxy Server
Galaxy Community Hub
Data source tool for importing multiple datasets using a JSON schema
Minimal setup required to run Galaxy under Kubernetes
Galaxy language server to help in Galaxy (https://galaxyproject.org/) tool wrappers development (work in progress).
Subset of Galaxy (http://galaxyproject.org/) core code designed to be used as a library.
A Galaxy Tool that was used to submit experimental results to Encode DCC circa 2012
Contains a set of Galaxy Tools written by the Blankenberg Lab
:mega: Galaxy Tools for Computational Chemistry
Galaxy wrappers for NCBI BLAST+ and related BLAST tools.
This repository is for installing and running a docker galaxy instance with pancancer aberrant pathway activity analysis (PAPAA) tools
Script to make data library of RefSeq reference genomes for specified genus
Wrappers for galaxy tools
Ansible playbooks for Galaxy Server deployment
Galaxy Tool wrappers
Tutorials and data sets for ASHG 2019 workshop on Genetic Counseling.
Interpretation of RNAseq experiments through robust, efficient comparison to public databases
Galaxy process management and system administration tools
Tutorial for installing Open XDMoD, OnDemand, & ColdFront
Specifications of SAM/BAM and related high-throughput sequencing file formats
Flask webserver for rendering igv.js