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deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

docker-nim-cross

Dockerfile for Nim lang

docopt.nim

Command line arguments parser that will make you smile (port of docopt to Nim)

dotfiles

my .bash, .vim, .* files

duktape-nim

Nim wrapper for the Duktape embeddable Javascript engine.

duphold

don't get DUP'ed or DEL'ed by your putative SVs.

dysgu

dysgu-SV is a collection of tools for calling structural variants using short or long reads

easyssh

Golang package for easy remote execution through SSH (Fork enables cross-compile)

echtvar

using all the bits for echt rapid variant annotation and filtering

excord

extract SV signal from a BAM

exter

coordinate transformation exon-space -> genome-space and back again.

faidx

faidx for golang

falas

Fragment-Aware Local Assembly for Short-reads

fastahack-python

cython wrapper to fastahack

fastbit-python

pythonic access to fastbit

fastquorum

nothing to see here

fgoxide

Quality of life improvements in Rust.

find_cns

find conserved non-coding sequences (CNS)

fishers_exact_test

Fishers Exact Test for Python (Cython)

fixle

fast, fixed-length, integer-keyed db via tokyo-cabine

flatfeature

python module for dealing with BED format for genomic data as a numpy array.

fraguracy

overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites

gargs

better(?) xargs in go

gemini

a lightweight db framework for disease and population genetics.

geneimpacts

prioritize effects of variant annotations from VEP, SnpEff, et al.

genoiser

use the noise

ggd

ggd-hg38-recipes

data recipes for hg38

giggle

Interval data structure

glnexus

Scalable gVCF merging and joint variant calling for population sequencing projects