candig Goto Github PK

chord_drs

PoC for data repository system based on GA4GH's specs for the Bento platform

clinical_etl_code

A library to convert clinical data in csv format into json documents for CanDIG ingestion

custom_igv

A repo that has a number of custom igv.js files we use

data-repository-service-schemas

A repository for the schemas used for the Data Repository Service.

datasets_service

Microservice implementation of dataset search services from CanDIG v1

federated-learning

For the development of differentially private federated machine learning on the CanDIG data services

federated_1kg

Repository for the federated thousand genomes analysis project

federation_service

Microservice implementation of federation code from CanDIG v1 for CanDIG v2

ga4gh_readthrough_fusions_example

genny

Elegant generics for Go

get_test_data

Get full VCFs and stub BAMs for 50 samples of data

github-action-pr-expanded

GitHub Action to Create Pull Request in Parent Repository when Submodules are Updated (Expanded)

go-model-service

A model variant service demonstarting CanDIG API best practices and stack/tooling.

graphql-interface

hostseq-keycloak-14-theme

hostseq-portal-tyk-configs

hostseq-variants-portal

HostSeq Variants Portal

hostseqportal-scripts

Hostseq portal scripts

htsget

Open Source implementation of the GA4GH htsget protocol for objects stored in Google Cloud Storage

htsget_app

Htsget API implementation based on the Htsget protocol

id-translator-public

id3-variants-training

igv.js

The CanDIG fork of Integrative Genomics Viewer.

images_bakeoff

Test bundling of bwa, picard, and samtools in various image/container formats

infrastructure

DevOps and other infrastructure notes and tools

jade-data-repo

The repo for the terra data repository built by the jade team.

katsu

MoHpackets based clinical metadata service for the CanDIG platform.

keycloak

Open Source Identity and Access Management For Modern Applications and Services

keycloak_configs

GSC Keycloak themes and config

mcfly

Go Layer for data