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metadata_service

Stand alone metadata service carved out from CanDIG v1.

metadata_service_v2

Metadata service for CanDIG v2

mock-data-generator

mohccn-data

Synthetic test data for MOHCCN

mohccn-synthetic-data

A consistent synthetic dataset used for testing across the CanDIG stack.

mohccn_clinical_data_model

Documents and issue tracker for the Marathon of Hope clinical data model

nginx-oidc-demo

Super simple demo showing how to use Nginx and Keycloak to protect an API

normalize-ingest

PoC normalize-on-ingest pipeline using MinIO bucket notifications (webhooks) and Flask server/listener to trigger (CWL) workflows

oarcc-may-2018

omop_service

The first prototype of the OMOP service based on the OMOP Common Data Model

presto-graphql-testbed

Testbed for playing with presto and graphql on top of FHIR and variant databases

profyle_ingest

Routines for ingesting PROFYLE metadata into a GA4GH repository

publicdocuments

CanDIG documents

python_model_service

Example CanDIG service following best practices in python. API viewable at:

query_number_variants

redcap-cloud

a collection of files & scripts used for transferring clinical metadata from redcap cloud to CanDIG

rems-demo

Elixir REMS DAC Portal demo configuration and deployment

repository-template

CanDIG repo template

rnaget_service

Implementation of GA4GH rnaget API

sample-data-generator

service-registry

toil

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

toy_dist_claims_rems

Like toy_dist_claims, but using cscfi/rems (the db) and cscfi/elixir_rems_proxy

tyk-kc-demo

A toy demo showing how to use Tyk to protect an API, denying access to it without an OIDC token from a Keycloak instance, and enforcing rate limiting

tyk-keycloak-starter-kit

A Tyk+Keycloak-based solution for secure full-stack web application deployment.

tyk_api_setup

vault-helper-tool

A helper tool that allows users to perform CRUD operations for user permissions in Vault

xlsx2csv-action