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Name: Matthew DeMaere
Type: User
Location: Bathurst, NSW, Australia
Name: Matthew DeMaere
Type: User
Location: Bathurst, NSW, Australia
Scripts supporting antarctic lake manuscript in development
bcubed and weighted bcubed external validation index
de Bruijn Graph REAd mapping Tool
Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.
A flexible version of CorEx developed for bio-data challenges that handles missing data, continuous/discrete variables, multi-CPU, overlapping structure, and includes visualizations
Conda recipes for the bioconda channel.
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
A repository for thoughts and ideas related primarily to my reseach interests in microbial genomics and metagenomics, community structure analysis, programming, scientific computing.
Protein homolog prediction by clustered reciprocal best LAST hit.
Distributed Evolutionary Algorithms in Python
a signal-level demultiplexer for Oxford Nanopore reads
Identifying viruses from metagenomic data by deep learning
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
FreeHi-C pipeline for high fidelity Hi-C data simulation.
Genome assembly by maximum likelihood
A collection of scripts and notes related to genomics and bioinformatics
A simple module for reading GFA v1 files.
Genome Informatics 2020 Poster
Software from Marie-Nelly et al., 2014 (High-quality genome assembly using chromosomal contact data)
GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
GraphPlas: Assembly Graph Assisted Recovery of Plasmidic Contigs from TGS Assemblies
A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
:exclamation: This is a read-only mirror of the CRAN R package repository. HiCseg — Detection of domains in HiC data
HiCzin: Normalizing metagenomic Hi-C data and detecting spurious contacts using zero-inflated negative binomial regression
Tracking and workflow instrumentation for NGS
Local fork
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.