cgoliver/rna-popgen-notebook

Jupyter notebook for RNA evolutionary algorithm and subsequent population genetics and BioPython tools.

RNA-Popgen-Notebook

Jupyter notebook for RNA evolutionary algorithm and subsequent population genetics and BioPython tools.

This notebook takes you from building populations using RNA structure-function as a model for evolving populations to studying these evolved populations using some basic population genetics tools.

The file Population_Genetics_work.ipynb has '...' placeholders where you can fill in the code yourself if you want to get some programming practice. The file Population_Genetics.ipynb is the fully coded version. You will find an implementation of the Nussinov RNA folding algorithm in the file fold.py.