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This package provides Illumina Mouse Methylation Array Annotation (12.v1, Genome Build mm10) compatible with minfi.

License: Other

R 100.00%
bioinformatics illumina-bead-chip methylation-analysis methylation-annotation methylation-arrays minfi

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illuminamousemethylationanno.12.v1.mm10's Issues

Does preprocessQuantile() work with this?

I use preprocessQuantile() from minfi and I get no error but when I check the output, it seems that only raw pre-processing is conducted? or that is what it says when I look at the output file.

mSetSq
class: GenomicRatioSet dim: 285662 24 metadata(0): assays(2): M CN rownames(285662): cg36602742_TC11 cg36602743_TC21 ... cg48344197_BC21 cg48344201_TC11 rowData names(0): colnames(24): 205333480075_R01C01 205333480075_R02C01 ... 205333480047_R05C02 205333480047_R06C02 colData names(16): Sample_Name Sample_Well ... yMed predictedSex Annotation array: IlluminaMouseMethylation annotation: 12.v1.mm10 Preprocessing Method: Raw (no normalization or bg correction) minfi version: 1.46.0 Manifest version: 0.0.1

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