A brief introduction into BioJava.
The goal of this tutorial is to provide an educational introduction into some of the features that are provided by BioJava.
At the moment this tutorial is still under development. Please check the BioJava Cookbook for a more comprehensive collection of many examples of what is possible with BioJava and how to do things.
Quick Installation
Book 1: The Core module, basic working with sequences.
Book 2: The Alignment module, pairwise and multiple alignments of protein sequences.
Book 3: The Protein Structure modules, everything related to working with 3D structures.
Book 4: The Genomics Module, working with genomic data
The content of this tutorial is available under the CC-BY license.
BioJava: an open-source framework for bioinformatics in 2012
Andreas Prlic; Andrew Yates; Spencer E. Bliven; Peter W. Rose; Julius Jacobsen; Peter V. Troshin; Mark Chapman; Jianjiong Gao; Chuan Hock Koh; Sylvain Foisy; Richard Holland; Gediminas Rimsa; Michael L. Heuer; H. Brandstatter-Muller; Philip E. Bourne; Scooter Willis
Bioinformatics (2012) 28 (20): 2693-2695.
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