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rapid-nf's Introduction

RAPiD-nf

RAPiD is an RNA-Seq pipeline used and maintained by Ying-Chih Wang and Hardik Shah in the Department of Genetics and Genomic Sciences, Icahn Institute for Data Science and Genomic Technology. RAPiD is implemented using the Nextflow pipeline engine and the LSF job manager to enabl processing of raw RNA-seq FASTQ files for analysing using:

Running RAPiD

See tutorial on running RAPiD using Nextflow v19.10.0 and LSF v10.1.0.0.

Authors

  • Ying-Chih Wang
  • Hardik Shah

Collaborators

  • Gabriel Hoffman
  • Kaur Alasoo
  • Veera Manikandan
  • Panos Roussos
  • Solly Sieberts
  • Laura Sloofman
  • Georgios Voloudakis

rapid-nf's People

Contributors

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Stargazers

Voloudakis Lab avatar Cuihua Xia avatar liuzq avatar Michael Gandal avatar

Watchers

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