A shiny app to perform single and multifactor differential analyses using edgeR
, DESeq2
, or limma
and create interactive visuzalizations. This app uses the output of a htseq-count-cluster
merged counts table or merge counts table from htseq's htseq-count
script and a matching annotation table or csv file.
library(shiny)
shiny::runGitHub('RNASeek', 'datasnakes')
- Clone or download the git repository.
git clone https://github.com/datasnakes/RNASeek.git
- Open RStudio or Rconsole and type:
library(shiny)
runApp('path/to/RNASeek')
The dependencies are shiny
, shinythemes
, and DESeq2
. Ensure you have the latest versions installed and the latest version of R.
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DESeq2")
Shaurita Hutchins | @sdhutchins | โ
Please feel free to open an issue if you have a question, feedback, or problem using this app.