Topic: rna-seq Goto Github
Some thing interesting about rna-seq
Some thing interesting about rna-seq
rna-seq,Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
Organization: ablab
Home Page: https://ablab.github.io/IsoQuant/
rna-seq,An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
User: agitter
rna-seq,Visual self-service analytics platform for big omics data.
Organization: bigomics
Home Page: http://www.bigomics.ch
rna-seq,A software package for analyzing snapshots of developmental processes
Organization: broadinstitute
Home Page: https://broadinstitute.github.io/wot/
rna-seq,Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially expressed genes. PowsimR is a flexible tool to simulate and evaluate differential expression from bulk and especially single-cell RNA-seq data making it suitable for a priori and posterior power analyses.
User: bvieth
Home Page: https://bvieth.github.io/powsimR/
rna-seq,Cell type annotation with local Large Language Models (LLMs) - Ensuring privacy and speed with extensive customized reports
Organization: celvoxes
Home Page: https://celvox.co
rna-seq,🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
Organization: combine-lab
Home Page: https://alevin-fry.readthedocs.io
rna-seq,🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
Organization: combine-lab
Home Page: https://combine-lab.github.io/salmon
rna-seq,RNAseq analysis notes from Ming Tang
User: crazyhottommy
rna-seq,GATK RNA-Seq Variant Calling in Nextflow
Organization: crg-cnag
rna-seq,Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
User: dtm2451
rna-seq,Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
Organization: gagneurlab
rna-seq,Reference-guided transcript discovery and quantification for long read RNA-Seq data
Organization: goekelab
rna-seq,minimal example implementations for bioinformatics workflow managers
Organization: goekelab
rna-seq,Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
Organization: goekelab
rna-seq,Identification of differential RNA modifications from nanopore direct RNA sequencing
Organization: goekelab
Home Page: https://xpore.readthedocs.io/
rna-seq,Python library to access Gene Expression Omnibus Database (GEO)
User: guma44
rna-seq,Analyze your RNA sequencing data without writing a single line of code
User: guyteichman
Home Page: https://guyteichman.github.io/RNAlysis/
rna-seq,Single cell analysis in the browser
Organization: kanaverse
Home Page: https://kanaverse.org/kana/
rna-seq,Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
Organization: maayanlab
Home Page: http://biojupies.cloud
rna-seq,Customizable workflows based on snakemake and python for the analysis of NGS data
Organization: maxplanck-ie
Home Page: http://snakepipes.readthedocs.io
rna-seq,MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
Organization: milaboratory
Home Page: https://mixcr.com
rna-seq,Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
Organization: nanoporetech
rna-seq,Finder of Somatic Fusion Genes in RNA-seq data
User: ndaniel
rna-seq,RNA-seq analysis pipeline for detection of gene-fusions
Organization: nf-core
Home Page: https://nf-co.re/rnafusion
rna-seq,A single-cell RNAseq pipeline for 10X genomics data
Organization: nf-core
Home Page: https://nf-co.re/scrnaseq
rna-seq,A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
Organization: owkin
Home Page: https://pydeseq2.readthedocs.io/en/latest/
rna-seq,Near-optimal RNA-Seq quantification
Organization: pachterlab
Home Page: https://pachterlab.github.io/kallisto
rna-seq,kallisto | bustools workflow for pre-processing single-cell RNA-seq data
Organization: pachterlab
Home Page: https://kallistobus.tools/
rna-seq,Differential analysis of RNA-Seq
Organization: pachterlab
Home Page: http://pachterlab.github.io/sleuth
rna-seq,Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
Organization: rnabioco
Home Page: https://rnabioco.github.io/clustifyr/
rna-seq,NicheNet: predict active ligand-target links between interacting cells
Organization: saeyslab
rna-seq,Table of software for the analysis of single-cell RNA-seq data.
Organization: scrna-tools
Home Page: https://www.scrna-tools.org
rna-seq,Fast and accurate gene fusion detection from RNA-Seq data
User: suhrig
rna-seq,
User: tallulandrews
rna-seq,https://www.sc-best-practices.org
Organization: theislab
Home Page: https://www.sc-best-practices.org
rna-seq,Lightweight and Fast; RNA-seq quantification at the event-level
User: timbitz
rna-seq,A repository for setting up a RNAseq workflow
User: twbattaglia
rna-seq,Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Organization: vanheeringen-lab
Home Page: https://vanheeringen-lab.github.io/seq2science
rna-seq,RNA velocity estimation in Python
Organization: velocyto-team
Home Page: http://velocyto.org/velocyto.py/
rna-seq,Batch effect adjustment based on negative binomial regression for RNA sequencing count data
User: zhangyuqing
rna-seq,Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
User: zjufanlab
Home Page: https://www.sciencedirect.com/science/article/pii/S2589004220300663
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