Topic: 10xgenomics Goto Github
Some thing interesting about 10xgenomics
Some thing interesting about 10xgenomics
10xgenomics,Convert Seurat objects to 10x Genomics Loupe files.
Organization: 10xgenomics
Home Page: https://10xgen.com/louper
10xgenomics,scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data
Organization: alexslemonade
10xgenomics,Functions for handling RNA-seq files and formats as input and output for scrattch functions.
Organization: alleninstitute
10xgenomics,🌈Scaffold genome sequence assemblies using linked or long read sequencing data
Organization: bcgsc
10xgenomics,:chains: Construct a Physical Map from Linked Reads
Organization: bcgsc
10xgenomics,⛓ Correct misassemblies using linked AND long reads
Organization: bcgsc
Home Page: https://bcgsc.github.io/tigmint/
10xgenomics,RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @Cornell-Trex
User: bixbeta
10xgenomics,Demultiplexing pipeline for sequencing data
User: csawye01
10xgenomics,Rmarkdown scripts for adult human postmortem SN & Cortex cell atlas project.
User: deevdevil88
10xgenomics,A Snakemake workflow for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits or in the MTX matrix file format powered by the R package Seurat.
Organization: epigen
10xgenomics,The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysis of the human pancreatic ductal progenitor cell niche
User: jdblab
10xgenomics,Scripts for sincle cell multiome analysis
User: kpatel427
10xgenomics,Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
Organization: lieberinstitute
Home Page: https://doi.org/10.1038/s41593-020-00787-0
10xgenomics,Code for the spatialLIBD R/Bioconductor package and shiny app
Organization: lieberinstitute
Home Page: http://LieberInstitute.github.io/spatialLIBD/
10xgenomics,R package containing functions useful for stitching Visium capture areas. Related to the example human brain data described at http://research.libd.org/visiumStitched_brain/.
Organization: lieberinstitute
Home Page: http://research.libd.org/visiumStitched/
10xgenomics,Pipeline for SpatialTranscriptomics and 10X Visium data
User: lima1
10xgenomics,R-based Xenium Spatial Analysis Toolkit to assess gene expression gradients
User: margokapustina
10xgenomics,Single-Cell RNA-seq analysis workflow for 10x Genomics data
User: metavannier
10xgenomics,Linked-reads based structural variant caller with barcode indexing
User: morispi
10xgenomics,Standalone tool and library allowing to work with barcoded linked-reads
User: morispi
10xgenomics,Repository of the master project in Bioinformatics at Lund University
User: mostafa-ti
10xgenomics,De novo assembly pipeline for 10X linked-reads using Supernova
Organization: nf-core
Home Page: https://nf-co.re/neutronstar
10xgenomics,Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
Organization: nf-core
Home Page: https://nf-co.re/scnanoseq/
10xgenomics,A single-cell RNAseq pipeline for 10X genomics data
Organization: nf-core
Home Page: https://nf-co.re/scrnaseq
10xgenomics,Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
Organization: nf-core
Home Page: https://nf-co.re/spatialvi
10xgenomics,One single-cell pipeline to rule them all, one pipeline to find them, one pipeline to unify them all, and with the data bind them.
Organization: openomics
Home Page: https://openomics.github.io/cell-seek/
10xgenomics,Awesome single-cell CITE-sequencing Pipeline
Organization: openomics
Home Page: https://openomics.github.io/cyte-seek/
10xgenomics,Interoperability between SpatialData and the Xenium Explorer
User: quentinblampey
Home Page: https://quentinblampey.github.io/spatialdata_xenium_explorer/
10xgenomics,Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptomics (ST)).
User: rezakj
10xgenomics,Generate probes for the 10x Genomics fixed assay
Organization: rnabioco
10xgenomics,Scripts developed to work with 10x Genomics sequencing results
User: rusalkaguy
10xgenomics,Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
User: sjackman
Home Page: https://doi.org/10.1186/s12859-018-2425-6
10xgenomics,Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
User: sjackman
Home Page: https://doi.org/10.1186/s12859-018-2425-6
10xgenomics,:sponge: Estimate sequencing saturation for GEX, VDJ, and ADT data from the 10x Genomics platform.
User: slowkow
10xgenomics,Tools that make spatial transciptomics easier / Outils pour simplifier la transcriptomique spatiale
User: vincent-therrien
10xgenomics,Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
Organization: wtsi-hpag
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