Topic: bioinformatics-analysis Goto Github

👇 Here are 303 public repositories matching this topic...

alvesrco / pipecov
bioinformatics-analysis,This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the pathogen. The scientific community and governments of other countries are looking for actions along these lines. The United Kingdom recently established a research network for genomic studies of SARS-CoV-2Covid-19 with a contribution of GBP 20 million (https://www.gov.uk/government/news/uk-launches-whole- genome-sequence-alliance-to-map-spread-of-coronavirus).
User: alvesrco
covid19 genomics bioinformatics-pipeline bioinformatics-analysis bioinformatics-scripts

biocontainers / containers
bioinformatics-analysis,Bioinformatics containers
Organization: biocontainers
Home Page: http://biocontainers.pro
bioinformatics bioinformatics-containers biocontainers-architecture bioinformatics-analysis rkt docker-image dockerfiles

biocontainers / specs
bioinformatics-analysis,BioContainers specifications
Organization: biocontainers
Home Page: http://biocontainers.pro
biocontainers biocontainers-architecture biocontainers-specification bioinformatics bioinformatics-analysis bioinformatics-containers docker rkt specifications

biojulia / genomegraphs.jl
bioinformatics-analysis,A modern genomics framework for julia
Organization: biojulia
Home Page: https://biojulia.dev
bioinformatics biology bio julia bioinformatics-analysis genomics genome-sequencing genome-assembly genome-graph genomes

bobeobibo / phigaro
bioinformatics-analysis,Phigaro is a scalable command-line tool for predicting phages and prophages
User: bobeobibo
bioinformatics bioinformatics-tool bioinformatics-pipeline bioinformatics-analysis biological-data-analysis phage phages prophage genomics genomic-data-analysis

brianyiktaktsui / skymap
bioinformatics-analysis,High-throughput gene to knowledge mapping through massive integration of public sequencing data.
User: brianyiktaktsui
Home Page: https://github.com/brianyiktaktsui/Skymap/blob/master/README.md
bioinformatics-pipeline bioinformatics-analysis bioinformatics-scripts big-data

bsel-uc3m / pmoss
bioinformatics-analysis,pMoSS (p-value Model using the Sample Size) is a Python code to model the p-value as an n-dependent function using Monte Carlo cross-validation. Exploits the dependence on the sample size to characterize the differences among groups of large datasets
Organization: bsel-uc3m
decay python statistics monte-carlo-sampling p-value nhst hypothesis-testing group-comparison big-data bioinformatics-analysis

bu-isciii / iskylims
bioinformatics-analysis,is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.
Organization: bu-isciii
Home Page: https://github.com/BU-ISCIII/iSkyLIMS/wiki
bioinformatics-analysis lims workflow ngs-analysis ngs ngs-data

bystrogenomics / bystro
bioinformatics-analysis,Bystro genetic analysis (annotation, filtering, statistics)
Organization: bystrogenomics
genomics genomics-search bioinformatics bioinformatics-pipeline bioinformatics-analysis bioinformatics-databases bioinformatics-algorithms bioinformatics-scripts

cancerit / cgpbigwig
bioinformatics-analysis,BigWig manpulation tools using libBigWig and htslib
Organization: cancerit
bigwig htslib coverage bioinformatics bioinformatics-analysis libbigwig

chgibb / phat
bioinformatics-analysis,Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
User: chgibb
Home Page: https://chgibb.github.io/PHATDocs
ngs alignment visualization analysis pathogen host next-generation-sequencing circos circos-graphs circos-plot

datirium / workflows
bioinformatics-analysis,CWL based Bioinformatics Workflows
Organization: datirium
biowardrobe cwl workflow epigenetics bioinformatics bioinformatics-pipeline bioinformatics-analysis chip-seq rna-seq clip-seq

deib-geco / pygmql
bioinformatics-analysis,Python Library for data analysis based on GMQL
Organization: deib-geco
genomics python big-data bedtools java anaconda pypi jupyter-notebook gmql binder

dohlee / snakemake-wrappers
bioinformatics-analysis,:snake: Snakemake wrappers for bioinformatics.
User: dohlee
bioinformatics reproducible-research snakemake-workflows snakemake bioinformatics-analysis wrapper snakemake-wrappers

duttonlab / kvasir
bioinformatics-analysis,Searching for Horizontal Gene Transfer
Organization: duttonlab
python genome bioinformatics-analysis

dvklopfenstein / reactomepy
bioinformatics-analysis,Explore biomolecular pathways in Reactome from the command-line or a Python script
User: dvklopfenstein
reactome reactome-pathway biological-networks molecular-biology pathway-enrichment-analysis pathway-analysis biotechnology biotech bioinformatics bioinformatics-pipeline

ebi-jdispatcher / webservice-clients
bioinformatics-analysis,A collection of Web Service Clients to consume EBI's Job Dispatcher tools via REST APIs
Organization: ebi-jdispatcher
Home Page: https://www.ebi.ac.uk/jdispatcher/
webservice-client bioinformatics-analysis bioinformatics-tool

ebi-jdispatcher / webservice-cwl
bioinformatics-analysis,Programmatic access to various data resources and analysis EBI tools via CWL
Organization: ebi-jdispatcher
Home Page: https://www.ebi.ac.uk/services
cwl webservice-client bioinformatics-analysis bioinformatics-tool python

fomightez / sequencework
bioinformatics-analysis,programs and scripts, mainly python, for analyses related to nucleic or protein sequences
User: fomightez
python genomics protein-sequences dna rna lists list bioinformatics-analysis bioinformatics-scripts bioinformatics

fungest / palimpsest
bioinformatics-analysis,An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
User: fungest
cancer-genomics genomics visualization r somatic-mutations mutational-signatures structural-variation clonality tumor-heterogeneity tumor-evolution

greenelab / multi-plier
bioinformatics-analysis,An unsupervised transfer learning approach for rare disease transcriptomics
Organization: greenelab
bioinformatics-analysis gene-expression-signatures machine-learning multiplier plier rare-diseases analysis methodology dataset

guyteichman / rnalysis
bioinformatics-analysis,RNA sequencing analysis software
User: guyteichman
Home Page: https://guyteichman.github.io/RNAlysis
rna-seq rna-seq-analysis rna-seq-pipeline rnaseq bioinformatics bioinformatics-pipeline bioinformatics-tool bioinformatics-analysis transcriptomics smallrna

huffordlab / nam-genomes
bioinformatics-analysis,Detailed bioinformatics scripts and methods used in the NAM genome paper.
Organization: huffordlab
Home Page: https://nam-genomes.org
bioinformatics-analysis maize genome-assembly genomics bioinformatics-scripts nam

imminfo / tcr
bioinformatics-analysis,[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.
Organization: imminfo
Home Page: https://immunarch.com/
immunoinformatics immunology tcr data-analysis ig tcr-repertoire ig-repertoire bioinformatics bioinformatics-analysis

jefferyustc / wtf-bioinformatics
bioinformatics-analysis,collection of bioinformatics tools and tips, maybe | 生物信息学软件工具、分析tips集合
User: jefferyustc
bioinformatics bioinformatics-analysis

jhuanglab / bioinstaller
bioinformatics-analysis,A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform
Organization: jhuanglab
bioinformatics-analysis ngs-analysis installer-script installer

jithin8mathew / protein-feature-extraction
bioinformatics-analysis,Python code to extract features from Protein sequences for Machine Learning/Deep Learning
User: jithin8mathew
protein-feature-extraction machine-learning protein-sequences biopython deep-learning linux extract-features fasta feature-extraction windows

kpatel427 / youtubetutorials
bioinformatics-analysis,
User: kpatel427
bioinformatics bioinformatics-analysis rna-seq single-cell tutorials youtube

lebinh190998 / genome-browser
bioinformatics-analysis,Genome browser to visualize and analyze genomic data
User: lebinh190998
Home Page: https://www.youtube.com/watch?v=jPPwD95kp28&ab_channel=BinhLe
bioinformatics biology biostatistics bioinformatics-analysis javascript interactive interactive-visualizations interactive-storytelling interactive-map react

lynnlangit / gcp-for-bioinformatics
bioinformatics-analysis,GCP for Bioinformatics Researchers
User: lynnlangit
Home Page: https://www.youtube.com/playlist?list=PL4Q4HssKcxYvcixWS08UFaYIH7y4IAV0z
gcp bioinformatics bioinformatics-pipeline bioinformatics-analysis genomics bioinformatics-researchers google nextflow google-batch

mikeroyal / bioinformatics-guide
bioinformatics-analysis,Bioinformatics Guide
User: mikeroyal
bioinformatics bioinformatics-pipeline data-science bioconductor bioinformatics-algorithms bioinformatics-analysis bioinformatics-tool biology python awesome

mjdelta / yolo2-keras
bioinformatics-analysis,detecting Red Blood Cell with yolov2
User: mjdelta
detection yolov2 object-detection rbc-datasets bioinformatics-analysis

nalomran / pyreqtl
bioinformatics-analysis,A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.
User: nalomran
bioinformatics bioinformatics-analysis bioinformatics-tool python python3 pandas numpy scipy rpy2 r

nasqar / nasqar
bioinformatics-analysis,NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization
User: nasqar
Home Page: http://nasqar.abudhabi.nyu.edu
nasqar bioinformatics bioinformatics-analysis rna-seq single-cell shiny-apps web-application docker deseq2 seurat

nilesh-tawari / chronqc
bioinformatics-analysis,Manuscript describing ChronQC is now available online in Bioinformatics
User: nilesh-tawari
Home Page: https://doi.org/10.1093/bioinformatics/btx843
bioinformatics bioinformatics-data bioinformatics-analysis qc ngs quality-control visualization python

pierrepo / pbxplore
bioinformatics-analysis,A suite of tools to explore protein structures with Protein Blocks :snake:
User: pierrepo
Home Page: https://pbxplore.readthedocs.org/en/latest/
python protein structure bioinformatics-analysis

pyladies-brazil / grupo-estudo-bioinformatica
bioinformatics-analysis,Repositório do grupo de estudo de Bioinformática da rede de comunidades das PyLadies Brasil.
Organization: pyladies-brazil
bioinformatics bioinformatics-pipeline bioinformatics-analysis biopython rosalind estudo

robinvanderlee / positive-selection
bioinformatics-analysis,Scripts and procedures for detecting positively selected genes and codons in primates
User: robinvanderlee
Home Page: https://doi.org/10.1093/nar/gkx704
bioinformatics bioinformatics-pipeline bioinformatics-scripts bioinformatics-analysis computational-biology evolution comparative-genomics positive-selection primates genetics

scialdonelab / ciara
bioinformatics-analysis, CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential markers of rare cell types looking at genes whose expression is confined in small regions of the expression space
Organization: scialdonelab
bioinformatics-analysis cluster-analysis feature-selection open-source rare-cells rstats-package

sgbc / galaksio
bioinformatics-analysis,An easy-to-use way for running Galaxy workflows.
Organization: sgbc
bioinformatics bioinformatics-analysis galaxy easy-to-use ngs workflow docker reproducible-research science user-friendly workflows

souradiptoc / codonu
bioinformatics-analysis,A python project for analysis of codon usage for gene or genome analysis
User: souradiptoc
Home Page: https://github.com/SouradiptoC/CodonU
bioinformatics bioinformatics-analysis bioinformatics-tool codon codon-bias codon-usage genome genome-analysis codonw cai

southgreenplatform / pyrice
bioinformatics-analysis,PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a smart query system which fits the computing resources to optimize the query speed.
Organization: southgreenplatform
Home Page: https://pyrice.readthedocs.io/en/latest
bioinformatics-analysis rice

sumanismcse / plant-disease-identification-using-cnn
bioinformatics-analysis,Plant Disease Identification Using Convulutional Neural Network
User: sumanismcse
plant-disease cnn machine-learning neural-networks image-analysis image-processing project kaggle python machine-learning-algorithms

sunyumail93 / pipernaseq
bioinformatics-analysis,A comprehensive pipeline for RNAseq data analysis
User: sunyumail93
rnaseq-pipeline transcriptome-analysis bioinformatics rnaseq bioinformatics-analysis bioinformatics-pipeline gene-expression rna rna-seq-analysis rna-sequencing

sydney-informatics-hub / bioinformatics
bioinformatics-analysis,A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.
Organization: sydney-informatics-hub
bioinformatics bioinformatics-analysis bioinformatics-pipeline bioinformatics-scripts cancer genomics germline-variants indels metagenomics nextflow nextflow-pipelines ngs research-computing rnaseq snps somatic-variants sydney-informatics-hub transcriptomics variant-calling

team-rosalind / team-rosalind-project
bioinformatics-analysis,This is the main repository for the HackBio'2020 Virtual Internship Experience ❤️
Organization: team-rosalind
Home Page: https://team-rosalind.github.io/team-rosalind-project/
bioinformatics computational-biology bioinformatics-analysis internship-task internship internship-challenge hackbio team-rosalind

twoxes / awesome-structural-bioinformatics
bioinformatics-analysis,Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
User: twoxes
molecular-informatics chemistry machine-learning deep-learning cheminformatics biology quantum-chemistry docking protein alphafold

uc-bd2k / grein
bioinformatics-analysis,GREIN : GEO RNA-seq Experiments Interactive Navigator
Organization: uc-bd2k
Home Page: https://shiny.ilincs.org/grein
rna-seq geo bioinformatics-pipeline bioinformatics-analysis rna-seq-pipeline rna-seq-data rna-seq-analysis graphical-interface r shiny-apps gene-expression-omnibus interactive-visualizations interactive-analysis processing geo-data-processing grein gene-expression

urmi-21 / pyrpipe
bioinformatics-analysis,Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
User: urmi-21
rna-seq rna-seq-pipeline ncbi-sra bioinformatics bioinformatics-pipeline bioinformatics-analysis python rna-seq-workflows conda bioconda

xqwen / fastenloc
bioinformatics-analysis,Colocalization analysis of genetic association signals
User: xqwen
bioinformatics bioinformatics-analysis genetic-association-analysis integrative-analysis colocalization